Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 402 / 6e-135 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26300 397 / 3e-133 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 391 / 7e-131 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 389 / 7e-130 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G57260 388 / 9e-130 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26320 378 / 1e-125 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G13110 377 / 3e-125 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT5G25140 375 / 9e-125 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT1G13080 375 / 2e-124 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26210 374 / 3e-124 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G084700 [exp] 1004 / 0 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 968 / 0 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084800 [exp] 726 / 0 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 721 / 0 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083000 [exp] 719 / 0 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G083500 [exp] 717 / 0 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083300 [exp] 712 / 0 AT3G26330 363 / 7e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G084400 [exp] 456 / 1e-158 AT4G36220 267 / 2e-85 ferulic acid 5-hydroxylase 1 (.1) Potri.001G167900 [exp] 436 / 2e-148 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013150 [exp] 429 / 3e-145 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 409 / 1e-137 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10019457 [exp] 402 / 6e-135 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 402 / 1e-134 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 393 / 2e-131 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10035502 [exp] 387 / 4e-129 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10017742 [exp] 387 / 5e-129 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10002885 [exp] 386 / 2e-128 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10033172 [exp] 380 / 2e-126 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10041951 [exp] 377 / 4e-125 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G085000.2 pacid=42766235 polypeptide=Potri.007G085000.2.p locus=Potri.007G085000 ID=Potri.007G085000.2.v4.1 annot-version=v4.1 ATGTCACGATCGATCTTAATTACACAATTAGTCAAAGTTCGATCAAAACAACAAATTAACAACAACATTGAACCTACCTCTCCTGTTTGTTTTTCCTTCA GGCTTCGATTCCTAAGTCACAATATCCAAGTAAATAAAAGGGTAGAGATTTTATACACTTCAAGAACAGCAAGTTACAGAATCACATCCATGGCTTGGAT TTGGGCTTCTCTAGCCTTTGTTGCACTTATCTTTCTGCTCCAATGGTTAAGCACCAAGAATAAGAGACTACCACCTGGTCCAAGAGGGTTTCCAATTTTT GGAAGCCTTCATTTGTTAGGGAAGTTTCCTCATCGAGCTCTTCATCAGCTTGCTCAAAAATATGGCCCTATCATGCATTTGCGGTTAGGCCTGGTGCCAA CCATTGTTGTCTCTTCGCCTGAAGCTGCCGAATTATTTCTTAAGACCCATGACCTTGTTTTTGCTGGTAGACCACCTCACGAGGCTGCAAGGTACATCTC TTATGGACAAAAAGGCATGGCTTTTGCACAATACGGTTCGTATTGGCGCAACATGCGTAAGATGTGCACAGTAGAGTTGCTTAGTAGCTTGAAAATTACA TCTTTCAAGCCAATGAGAATGGAGGAGCTTGATCTGTTGATTAAGTACATTCAAGAAGCTGCACAGGAACGTGTTGCTGTCGATATGAGTGCCAAGGTTT CGTCCCTCAGTGCTGACATGAGCTGTAGAATGGTGTTTGGGAAGAAATATGTAGATGAGGATCTTGATGAGAGGGGATTCAAATCTGTGATGCAAGAGGT CATGCATTTAACAGCAGCTCCACATTTGGGAGATTACATTCCTCAAATCGCAGCTCTTGATCTCCAGGGACTGACAAAACGCATGAACGCTATTTCCAAA GTGTTTGATGTCTTTCTTGACAAGATTATTGATGAGCATGTCCAATACCAGGAGAAGGGCAAAAACAAGGACTTTGTTGATGTCATGCTAAGTTTGATGA AATCCGAAGAAAACGAGTACCTTGTTGATCAAGGCTGTATGAAAGCCACAATGCTGGACATGCTTGTGGGTTCAATGGACACTTCAGCAACTGTGATTGA CTGGGCATTCTCAGAACTGATAAAAAATCCACGGGTTATGAAGAAACTGCAAAAAGAAATAGAAGAAGTAGTGGGAAAGCAAAGGATGGTAGAAGAATCA GACTTGGAGAGGTTGGAGTACCTAGACATGGTTGTGAAGGAAACCTTGCGGCTTCATCCAGCGGGTCCTTTGATGATCCCTCATGAGGCCACGGAGGACT GCGTTGTGAATGGCTTCCACATACCAAAGAAATCACATGTTATAATCAATGTATGGGCCATTGGTCGAGACCCAAAAGCTTGGACAGATGCAGAAAAGTT TTACCCAGAGAGGTTTGTTGGTAGTGACATAGATGTTCGGGGCCGAGACTTCCAGCTTATTCCATTTGGCACTGGCCGCAGAAGCTGCCCTGGAATGCAA TTGGGGCTAACTGTGGTGCGACTGGTGCTTGCGCAGCTGGTGCATTGCTTTGATTGGGAACTTCCAAATGGAATATTGCCATCTGAAGTGGACATGACAG AAGAGTTTGGTCTCGTACTCTGCAGGTCCAAGCATCTAGTAGCTATTCCTACATATCGCCTTAACAAATGA
AA sequence Show only first row Show all	>Potri.007G085000.2 pacid=42766235 polypeptide=Potri.007G085000.2.p locus=Potri.007G085000 ID=Potri.007G085000.2.v4.1 annot-version=v4.1 MSRSILITQLVKVRSKQQINNNIEPTSPVCFSFRLRFLSHNIQVNKRVEILYTSRTASYRITSMAWIWASLAFVALIFLLQWLSTKNKRLPPGPRGFPIF GSLHLLGKFPHRALHQLAQKYGPIMHLRLGLVPTIVVSSPEAAELFLKTHDLVFAGRPPHEAARYISYGQKGMAFAQYGSYWRNMRKMCTVELLSSLKIT SFKPMRMEELDLLIKYIQEAAQERVAVDMSAKVSSLSADMSCRMVFGKKYVDEDLDERGFKSVMQEVMHLTAAPHLGDYIPQIAALDLQGLTKRMNAISK VFDVFLDKIIDEHVQYQEKGKNKDFVDVMLSLMKSEENEYLVDQGCMKATMLDMLVGSMDTSATVIDWAFSELIKNPRVMKKLQKEIEEVVGKQRMVEES DLERLEYLDMVVKETLRLHPAGPLMIPHEATEDCVVNGFHIPKKSHVIINVWAIGRDPKAWTDAEKFYPERFVGSDIDVRGRDFQLIPFGTGRRSCPGMQ LGLTVVRLVLAQLVHCFDWELPNGILPSEVDMTEEFGLVLCRSKHLVAIPTYRLNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G085000 [exp]	0	1
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Potri.005G093600 [exp]	1.00	0.9438
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Potri.012G145600 [exp]	4.89	0.9073
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088900 [exp]	5.47	0.9121
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Potri.001G291800 [exp]	11.61	0.8912
AT4G30000			Dihydropterin pyrophosphokinas...		Potri.008G097400 [exp]	12.88	0.8597
AT4G35760			NAD(P)H dehydrogenase (quinone...		Potri.005G106500 [exp]	16.61	0.9106
AT3G03620			MATE efflux family protein (.1...		Potri.013G069600 [exp]	18.73	0.9056
AT1G21350			Thioredoxin superfamily protei...		Potri.002G071000 [exp]	18.92	0.9218
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Potri.019G024000 [exp]	19.89	0.8937	PtrcPrxIIF,Pt-PRX.1
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G013900 [exp]	20.19	0.9209	AMT2

Compare expression of checked genes

Potri.007G085000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.