Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58950 604 / 0 Protein kinase superfamily protein (.1) AT3G46930 446 / 4e-153 Protein kinase superfamily protein (.1) AT1G62400 340 / 1e-113 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 280 / 2e-89 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 271 / 6e-86 Protein kinase superfamily protein (.1) AT2G17700 231 / 4e-69 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 231 / 5e-69 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT3G27560 224 / 2e-68 ATN1 Protein kinase superfamily protein (.1) AT5G01850 223 / 3e-68 Protein kinase superfamily protein (.1) AT5G40540 221 / 1e-67 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G082200 [exp] 880 / 0 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 343 / 1e-114 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 335 / 1e-111 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 334 / 4e-111 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 333 / 9e-111 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 292 / 6e-94 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 290 / 3e-93 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.018G001900 [exp] 283 / 2e-90 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 281 / 7e-90 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011173 [exp] 619 / 0 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 616 / 0 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 566 / 0 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10015314 [exp] 339 / 2e-113 AT5G58950 318 / 1e-105 Protein kinase superfamily protein (.1) Lus10020018 [exp] 333 / 3e-110 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10042122 [exp] 325 / 2e-107 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 333 / 6e-106 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 283 / 2e-90 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10002374 [exp] 256 / 3e-82 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10000237 [exp] 256 / 3e-82 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G085300.4 pacid=42765472 polypeptide=Potri.007G085300.4.p locus=Potri.007G085300 ID=Potri.007G085300.4.v4.1 annot-version=v4.1 ATGGAGGAGGAGGCTAACTCTTGGATAAGGAGGACTAATTTCTCTCACACAGTATATCACCGTTTGGATTCTTCAAGGATGGCTTCTTTTCCTATCAATA TTCAGACAGAGAGAATTGTGGGCTTGAAATCCAGGCCTGGAACAGGAACTGCTTCTCCCAAGCAGAAATCACAGCAATCCTTTTTTAATCAAAACTCTCA ACACTCCTTTCCCAATCAGAAATCACTTTCCTTTCCCAGTCAGAAATCATCAGTGTCTAATAATTCTCAGATTCAGAGAAATCCACTCTCCAATAAGCAA AGGTCTTTATCTCCTCTCCCTAAAACAATCCTTCCTGATACTTTTAAAGAAGCAAGGTCTGTTAATAAGAGATTCTCGACGCCACTTCCTCGTAGAAAAG ATCAAGACATGGGAATTATAGGAAAATTTTTGCATAAAGAGTTAAAAGAAACCAAGGAGAAGCTCAATACAAGCCCACTTAGGCACTTAGCCTTGATGAA GGGTGGTCATGAAAAGTCTAGGAGCAAGAAGGAATCTGCTTGGACAAAGTATTTTGATCATGGTGGAGGAAAGGTTAATGCTGTGGAAGCAGCTGACGAA TGCAGTGTTGATCTGTCTAAGCTGTTTCTCGGGCTTAGATTTGCTCATGGGGCACACAGTAGGCTTTACCATGGTCTATATAAAGATGAACCTGTTGCAG TTAAACTTATTAGGGTACCAGATGATGATGAAAATGGAAACTTAGCAATTCGATTAGAGAATCAATTCAACAGAGAAGTCATGCTTCTATCTCACCTTCA CCATCCAAATGTCATTAAGTTTGTAGCAGCATGCAGAAAGCCTCCAGTTTATTGTGTTATAACAGAATATTTATCCGAGGGTTCCTTGAGAGCATACTTG CACAAGCTTGAGCATAAAACTCTCTCCTTAGGGAAATTAATGACAATTGCTCTGGACATTGCTCGTGGAATGGAATACATTCACTCTCAAGGTGTCATTC ATAGGGACCTTAAACCAGAGAATGTCCTTATTGATCAAGAGTTCCACTTAAAGATTGCTGATTTTGGTATAGCTTGTGGAGATGCATATTGTGATTCCTT GGCTGATGACCCTGGCACTTATAGATGGATGGCACCTGAGATGATAAAAAAGAAATCCTATGGGCGAAAAGTTGATGTGTACAGCTTTGGACTCATCTTA TGGGAAATGGTGGCTGGAACAATTCCCTATGAGGATATGACTCCCATCCAAGCTGCCTTTGCAGTAGTGAATAAGAATTCAAGACCTGTTATCCCGAGGG ACTGTCCTGCTGCCATGGGAGCTCTAATTGAGCAATGTTGGTCATTGCAGCCAGATAAGAGGCCAGAGTTTTGGCAGATTGTAAAGGTATTGGAGCAATT TGAATCTTCTCTTGCTCATGACGGAACCTTGAATCTGGTACCGAACCCAGCTTGCCAAGATCATAAGAAAGGAATGCTCCATTGGATTCAAAAGCTTGGT ACTGTGAATCCTAATAGCACACCAATGCCTAAACCTAAATTCACATGA
AA sequence Show only first row Show all	>Potri.007G085300.4 pacid=42765472 polypeptide=Potri.007G085300.4.p locus=Potri.007G085300 ID=Potri.007G085300.4.v4.1 annot-version=v4.1 MEEEANSWIRRTNFSHTVYHRLDSSRMASFPINIQTERIVGLKSRPGTGTASPKQKSQQSFFNQNSQHSFPNQKSLSFPSQKSSVSNNSQIQRNPLSNKQ RSLSPLPKTILPDTFKEARSVNKRFSTPLPRRKDQDMGIIGKFLHKELKETKEKLNTSPLRHLALMKGGHEKSRSKKESAWTKYFDHGGGKVNAVEAADE CSVDLSKLFLGLRFAHGAHSRLYHGLYKDEPVAVKLIRVPDDDENGNLAIRLENQFNREVMLLSHLHHPNVIKFVAACRKPPVYCVITEYLSEGSLRAYL HKLEHKTLSLGKLMTIALDIARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADFGIACGDAYCDSLADDPGTYRWMAPEMIKKKSYGRKVDVYSFGLIL WEMVAGTIPYEDMTPIQAAFAVVNKNSRPVIPRDCPAAMGALIEQCWSLQPDKRPEFWQIVKVLEQFESSLAHDGTLNLVPNPACQDHKKGMLHWIQKLG TVNPNSTPMPKPKFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58950			Protein kinase superfamily pro...		Potri.007G085300 [exp]	0	1
AT3G13310			Chaperone DnaJ-domain superfam...		Potri.011G166500 [exp]	4.47	0.8311
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.014G111900 [exp]	8.18	0.8640
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054700 [exp]	8.24	0.8110	Pt-HSP70.6
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	13.26	0.8552
AT2G39210			Major facilitator superfamily ...		Potri.008G032901 [exp]	18.33	0.8412
AT1G78230			Outer arm dynein light chain 1...		Potri.002G097800 [exp]	19.97	0.8390
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.008G095300 [exp]	21.35	0.7704
AT5G65520			Tetratricopeptide repeat (TPR)...		Potri.002G111300 [exp]	26.53	0.8477
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.015G134600 [exp]	27.05	0.8264	Pt-GA20.2,GA20ox8
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	27.74	0.8210

Compare expression of checked genes

Potri.007G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.