Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22070 1088 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 562 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 545 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 537 / 1e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 537 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 512 / 7e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 505 / 2e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 504 / 3e-167 unknown protein AT3G23330 497 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 501 / 1e-165 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 592 / 0 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 577 / 0 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 527 / 1e-177 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 527 / 1e-176 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 526 / 1e-176 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 522 / 6e-176 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 526 / 2e-175 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 520 / 1e-174 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 518 / 6e-174 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016425 [exp] 1149 / 0 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 589 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 583 / 0 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013540 [exp] 525 / 4e-176 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 506 / 2e-169 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 509 / 1e-168 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020081 [exp] 491 / 1e-163 AT3G49710 886 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 495 / 6e-163 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 498 / 5e-162 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001483 [exp] 483 / 4e-161 AT5G39680 691 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.007G085500.1 pacid=42765736 polypeptide=Potri.007G085500.1.p locus=Potri.007G085500 ID=Potri.007G085500.1.v4.1 annot-version=v4.1 ATGGAGATCCCAAACCCACCGTATTTCTCTTGTCATTCAGAGTCTTGTGCCCATCTCCTTCAAACTAGCCTTAAATCGAGAGACCCTTTAAAAGGAAAAT CAATCCATGCTCAGATGGTTAAATTAGGCCTTACCTTCAGTGTCTATTTAATGAACAACCTCATGAACTTGTATGCAAAAACCGGGTTTCATTTAGATGC CCACGATTTATTCAATGAAATGCCTGTGAAGACCACTTTCTCATGGAACACAATTCTTTCTGGGTATGCGAAGCAGGGAAAATTAGAGAAAGCCCATCAG GTTTTTGATTTAATACCTGTTCGTGATTCTGTTTCGTGGACTACGATAATCGTGGGTTATAATCAAATGGGTCGTTTTGAAGATGCGATAAAGATTTTTG TAGATATGGTGAAGGATAAAGTTTTGCCGACCCAGTTCACACTTACTAATGTCCTTGCTTCATGTGCTGCCACCGGGTCTCGAGGTATAGGGAAGAAGGT TCATTCTTTTGTTGTTAAATTAGGACTTCATGCGTGTGTTCCTGTTGCGAATTCGCTTTTAAATATGTATGCAAAGACAGGAGATTTGAAGATGGCCAAG GTTGTTTTTGATAGGATGAAGTTGAGGAACACATCAAGCTGGAATGCTATGATTTCCTTGCATATGAATTGTGGTAGGGTTGACCTCGCTCTTGCTCAGT TTGAGCTATTGAGTGAACGCGATATTGTTTCATGGAATTCAATGATTGCAGGATGCAATCAGCATGGTTTTGATAATGAAGCATTACAGTTCTTCTCTAG TATATTAAAAGATACGTCTCTGAAGCCTGATAGGTTTTCCCTAGCAAGTGCTTTATCGGCTTGTGCCAATCTTGAGAAGTTGAGTTTTGGTAAACAAATT CATGGTTATATTGTTCGGACAATGTTCGACGCTTCAGGAGCTGTGGGAAATGCTTTGATCTCAATGTATGCAAAGTCTGGAGGAGTTGAAATTGCTCGAA GAATCATAGAGCAGAGTGGGATTTCAGATCTTGATGTGATAGCTTTTACGGCCTTATTGAATGGATATGTCAAGCTTGGTGATATAACCCCAGCCAGACA AATATTTAACTCATTGAAAGACCCCGATGTGGTTGCTTGGACTGCCATGATTGTAGGTTATGTACAGAATGGCTTAAATAATGATGCTATAGAGGTATTC AAAACAATGGTTAGTGAAGGACCTCGGCCAAACAGTTTTACTCTAGCAGCTATGTTGAGTGCCAGTTCAAGTGTGACATCTTTGAATCATGGAAAACAAA TTCATGCAAGTGCAATAAGATCAGGGGAGGCATTATCACCTTCTGTGGGCAATGCTCTGACTACGATGTATGCAAAAGCTGGAAGCATAAATGGTGCACG GAAAGTATTCAATCTTCTACGTCAGAACAGAGATACTGTCTCTTGGACTTCTATGATTATGGCTTTAGCTCAACATGGTCTTGGAGAAGAAGCCATAGAA CTATTTGAACAGATGTTGACACTTGGTATCAAGCCTGACCATATAACTTATGTTGGGGTGCTCTCTGCCTGTACACATGGAGGATTGGTGGAGCAGGGCC GAAGCTATTTTGATTTGATGAAAAATGTACACAAAATTGATCCCACCCTGAGCCACTATGCATGCATGGTTGACCTATTTGGGCGTGCTGGATTGCTGCA AGAAGCATACAAATTTGTAGAAAATATGCCTATGGAACCAGATGTTATAGCTTGGGGTTCACTTTTATCTTCTTGTAAGGTTTATAAAAATGTTGATCTG GCAAAAGTTGCGGCAGAGAGACTGCTACTTATTGAGCCTAACAATAGTGGGGCATACTCTGCCCTTGCTAATGTGTATTCATCTTGTGGGAAATGGGATG ATGCTGCAAAAATTAGAAAATTGATGAAGGCTAGAGGAGTTAAAAAGGAGCAAGGACTTAGTTGGGTTCAGATCCAGAACAAAACCCATGTATTTGGAGT GGAGGATGGTCTTCACCCACAGAAAGACGAAATCTATAAGATGATGGACAAGATCTGGAAGGAGATAAAAAAGATGGGTTTTGCTCCAGACACTGAATCT GTATTGCATGACCTTGAAGTAGAGGTGAAAGATCAGATTCTTAGATATCACAGCGAGAAACTTGCCATCGCATTTGGGATAATAAGTACTCCAGAAAACA CTACATTGCGGATCATGAAGAACCTTCGAGTCTGTAATGACTGTCACAATGCCATCAAATTTATCTCCAAGCTTGTGGACAGAGAAATAATTGTGAGAGA TGCTACTCGTTTTCACCATTTCAAGGATGGTTCCTGTTCTTGTAAGGACTATTGGTAG
AA sequence Show only first row Show all	>Potri.007G085500.1 pacid=42765736 polypeptide=Potri.007G085500.1.p locus=Potri.007G085500 ID=Potri.007G085500.1.v4.1 annot-version=v4.1 MEIPNPPYFSCHSESCAHLLQTSLKSRDPLKGKSIHAQMVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ VFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAK VVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQI HGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVF KTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIE LFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDL AKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTES VLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	0	1
AT3G22450			Ribosomal L18p/L5e family prot...		Potri.008G153100 [exp]	1.41	0.9399
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	2.44	0.9384
AT5G06540			Pentatricopeptide repeat (PPR)...		Potri.016G065500 [exp]	3.00	0.9371
AT1G23450			Tetratricopeptide repeat (TPR)...		Potri.008G212000 [exp]	3.87	0.9338
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	4.24	0.9298
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	6.63	0.9353
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	8.77	0.9171
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	8.94	0.9252
AT2G15530			RING/U-box superfamily protein...		Potri.011G103301 [exp]	8.94	0.9046
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G137900 [exp]	10.24	0.8891

Compare expression of checked genes

Potri.007G085500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.