Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-STGA1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65210 523 / 0 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 520 / 0 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G77920 409 / 1e-142 bZIP bZIP transcription factor family protein (.1) AT1G22070 404 / 2e-140 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G06950 328 / 2e-111 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G08320 323 / 6e-109 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT3G12250 321 / 1e-108 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT1G68640 313 / 1e-103 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G06960 307 / 3e-103 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G06839 310 / 7e-103 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G082000 [exp] 660 / 0 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G170500 [exp] 455 / 1e-160 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 441 / 3e-155 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G079900 [exp] 416 / 3e-147 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.001G029800 [exp] 350 / 5e-118 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 346 / 3e-116 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.016G036500 [exp] 344 / 1e-115 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 339 / 8e-114 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.008G118300 [exp] 338 / 2e-113 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035873 [exp] 516 / 0 AT5G65210 456 / 3e-161 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10011445 [exp] 505 / 3e-180 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10037550 [exp] 500 / 3e-177 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10025789 [exp] 456 / 2e-161 AT5G65210 402 / 4e-140 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10009055 [exp] 409 / 2e-142 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10042005 [exp] 402 / 5e-140 AT1G77920 428 / 5e-150 bZIP transcription factor family protein (.1) Lus10018009 [exp] 400 / 9e-139 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10031349 [exp] 394 / 2e-136 AT1G77920 429 / 1e-150 bZIP transcription factor family protein (.1) Lus10026166 [exp] 350 / 5e-120 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 348 / 6e-119 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.007G085700.3 pacid=42765869 polypeptide=Potri.007G085700.3.p locus=Potri.007G085700 ID=Potri.007G085700.3.v4.1 annot-version=v4.1 ATGAATTCCACATCCACTCAGTTTGTCACCCCCGGAAGGATGGGCATCTATGACCCTATGCATCAGATTGGTATGTGGGGAGAAAATTTTAAGAGTAATG GAAATCCTAATACTTCAACAATGTTCATAGCTGGTAATCCAAATGCGTCTGCATCGATGATTATAGCACCAGACACAAAGCTAGACAATCAGTCAGAGGA TACTTCACAGGGTACTCTTGGACATTCTAACAAGTATGACCAAGAAGCATCTAAACCTGCTGATAAGGTACAAAGACGTCTTGCACAAAATCGCGAGGCT GCTCGTAAAAGCCGTTTGCGGAAGAAGGCTTATGTTCAGCAGTTAGAATCAAGTCGTGTGAAGCTCATTCAGTTGGAGCAGGAGCTTGACAGAGCTAGAC AACAGGGCCTGTATATAGGTGGTGGAGTAGATGCTAGTCAGCTAGGTTTTGGAGGACCTACAAACTCAGGGATTGCAACTTTTGAGATGGAGTATGCGCA CTGGTTGGAGGAGCAAAACAGACATATTTGTGATATGAGGACTGCTTTAAACGCTCATATAAGTGACGTAGAGCTCCGCATACGTGTAGAGAGTGACATG AGCCACTATTTCGAACTTTTTCGCCTGAAAGCAACTGCAGCAAAAGCTGATGTTTTCTATGTGATGTCTGGCTTGTGGAAATCGTCGGCAGAAAGGTTTT TCTTGTGGATTGGAGGGTTTCGCCCTTCAGAGCTTCTTAAGATTCTCGTGCCTTGCATGGAGCCCTTGACAGAACAGCAACTTATGGATGTTCTTAATCT TAGACAATCATGCCAGCAAGCTGAAGATGCTCTTTCACAAGGTTTGGAAAAACTCCAGCAAAATGTAGCAGAGACTGTGGCAGCTGGTAAGTTGGGTGAA GCAAGTTACTCGCATCATATGGAAACTGCAATGGAGAAGTTAGAAGCTCTGGCCCGCTTTGTGCAGCAGGCAGACCATATACGCCAGGAAACTTTGCAGC AGATGTCTCGTATCTTAACAACACGTCAGGCAGCTCGAGGGCTGCTTGCCTTAGGAGAATACTTCCAACGGCTTCGGGCTCTGAGTTCACTTTGGGCAAC CCCACGTGAGCCTGCCTAG
AA sequence Show only first row Show all	>Potri.007G085700.3 pacid=42765869 polypeptide=Potri.007G085700.3.p locus=Potri.007G085700 ID=Potri.007G085700.3.v4.1 annot-version=v4.1 MNSTSTQFVTPGRMGIYDPMHQIGMWGENFKSNGNPNTSTMFIAGNPNASASMIIAPDTKLDNQSEDTSQGTLGHSNKYDQEASKPADKVQRRLAQNREA ARKSRLRKKAYVQQLESSRVKLIQLEQELDRARQQGLYIGGGVDASQLGFGGPTNSGIATFEMEYAHWLEEQNRHICDMRTALNAHISDVELRIRVESDM SHYFELFRLKATAAKADVFYVMSGLWKSSAERFFLWIGGFRPSELLKILVPCMEPLTEQQLMDVLNLRQSCQQAEDALSQGLEKLQQNVAETVAAGKLGE ASYSHHMETAMEKLEALARFVQQADHIRQETLQQMSRILTTRQAARGLLALGEYFQRLRALSSLWATPREPA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.007G085700 [exp]	0	1	Pt-STGA1.4
AT4G22790			MATE efflux family protein (.1...		Potri.003G116700 [exp]	1.73	0.8564
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	5.91	0.8347
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.011G052600 [exp]	6.16	0.8457
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	8.48	0.8312
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.001G074100 [exp]	8.48	0.7899
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.006G201900 [exp]	10.00	0.8353
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	12.72	0.8341
AT4G24730			Calcineurin-like metallo-phosp...		Potri.012G089300 [exp]	13.49	0.7883	WR3.1
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.010G053100 [exp]	13.96	0.8073
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Potri.002G111700 [exp]	14.49	0.8068

Compare expression of checked genes

Potri.007G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.