Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22120 387 / 7e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G50440 137 / 4e-39 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT1G11020 127 / 1e-34 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G47550 49 / 1e-06 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 46 / 1e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 44 / 3e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 43 / 9e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G01275 42 / 0.0002 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G02960 42 / 0.0002 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT4G34100 42 / 0.0003 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G081500 [exp] 440 / 4e-157 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.018G073400 [exp] 150 / 1e-43 AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G154800 [exp] 144 / 2e-41 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G252900 [exp] 139 / 6e-40 AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G005800 [exp] 135 / 1e-38 AT1G50440 374 / 2e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.004G093500 [exp] 46 / 9e-06 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G111700 [exp] 44 / 5e-05 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.008G127400 [exp] 44 / 5e-05 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G169200 [exp] 44 / 8e-05 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019687 [exp] 415 / 4e-147 AT2G22120 546 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10016426 [exp] 412 / 6e-146 AT2G22120 543 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10033053 [exp] 140 / 8e-40 AT1G11020 457 / 2e-163 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017764 [exp] 136 / 2e-39 AT1G11020 254 / 3e-85 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10034832 [exp] 137 / 3e-37 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033381 [exp] 124 / 3e-33 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10014172 [exp] 53 / 2e-09 AT2G22120 71 / 2e-16 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035010 [exp] 47 / 6e-06 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 46 / 1e-05 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 46 / 2e-05 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.007G085900.1 pacid=42764861 polypeptide=Potri.007G085900.1.p locus=Potri.007G085900 ID=Potri.007G085900.1.v4.1 annot-version=v4.1 ATGGCTGATCATGTATCAGACACTTCACCTTTAATCCCCCCGTCTCCGATCACCGAACCCAGCGAGATCGACCTTGAAGCCGGTCCCGGCGAGCAAATTC AGTGCCGTATTTGCCTCGAAACTGACGGTAGGGATTTTATTGCACCTTGCAAATGCAAAGGAACGGTTAAGTATGTACATCGTGAATGCCTGGATCAGTG GCGAGCAGTGAAGGAAGGGTTTGCATTTGCTCATTGCACAACCTGCAAGGCTCCTTACCATTTGAGAGTTCACGTTGCTACTGATAGGAAATGGCGAACT CTGAAATTTCGATTCTTTGTGACCAGAGACATTGCGTTTATATTTCTGGCTGTTCAGCTTGTAATTGCTTCACTAGCATATTTGGTGTACCTAATTGACA CTTATCAAAAGTCTTGGCTTCGTCTCGCATGGGGCTTTGATAGTGAGCTTAGTTTCTACTACATATGTGGAGCACTATTATTCTTTGCTTTACTGGGGCT ATCCGGGTGCTTCATAACTTGCTATGATCGAAGAGTACGCAATGATTTGGCTCAGCCTTGTCGGGAGTTATGTCTTTGTTGCTGCCAGCCTGGAGTGTGT GCAGATTGTCATTTACCTGGCACTCTTTGTATCTGGACAGACTGTACTACATGCTTTGAAAGCTGTGCAAGCACAGCTGGTGAATGTGGTTGCTTAGGAG GTGCCGGTGAAGCAGGGTTACCACTATTGTTTATAATGGCTTTGATAGTGCTTGGACTATTTACTGTGATTGGCATATTCTACAGCGTGTTGGTGGCCAC AATGGTTGGACAATGA
AA sequence Show only first row Show all	>Potri.007G085900.1 pacid=42764861 polypeptide=Potri.007G085900.1.p locus=Potri.007G085900 ID=Potri.007G085900.1.v4.1 annot-version=v4.1 MADHVSDTSPLIPPSPITEPSEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTVKYVHRECLDQWRAVKEGFAFAHCTTCKAPYHLRVHVATDRKWRT LKFRFFVTRDIAFIFLAVQLVIASLAYLVYLIDTYQKSWLRLAWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVC ADCHLPGTLCIWTDCTTCFESCASTAGECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22120			RING/FYVE/PHD zinc finger supe...		Potri.007G085900 [exp]	0	1
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	2.44	0.9282	CESA.2
AT2G28320			Pleckstrin homology (PH) and l...		Potri.009G011200 [exp]	7.34	0.8716
AT5G43150			unknown protein		Potri.010G088200 [exp]	7.87	0.8796
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375500 [exp]	11.18	0.8297
AT5G55970			RING/U-box superfamily protein...		Potri.011G094800 [exp]	12.68	0.8579
AT3G05580		TOPP9	type one protein phosphatase 9...		Potri.013G014700 [exp]	13.07	0.8384
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Potri.006G145200 [exp]	14.31	0.7338
AT2G17530			Protein kinase superfamily pro...		Potri.007G063100 [exp]	16.15	0.8210
AT1G13900			Purple acid phosphatases super...		Potri.010G160500 [exp]	16.24	0.8472
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	16.37	0.8668	Pt-CESA2.1

Compare expression of checked genes

Potri.007G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.