Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01150 71 / 5e-16 RHA2B RING-H2 finger protein 2B (.1) AT1G15100 68 / 7e-15 RHA2A RING-H2 finger A2A (.1) AT1G72310 67 / 1e-13 ATL3 RING/U-box superfamily protein (.1) AT2G04240 64 / 2e-13 XERICO RING/U-box superfamily protein (.1.2) AT5G66160 66 / 3e-13 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT5G05810 66 / 5e-13 ATL43 RING/U-box superfamily protein (.1) AT3G16720 65 / 9e-13 ATL2 TOXICOS EN LEVADURA 2 (.1) AT2G20030 64 / 1e-12 RING/U-box superfamily protein (.1) AT3G19950 64 / 1e-12 RING/U-box superfamily protein (.1) AT3G03550 64 / 2e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G081300 [exp] 197 / 1e-65 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.007G086200 [exp] 186 / 4e-61 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.005G081200 [exp] 159 / 3e-50 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.007G086300 [exp] 153 / 4e-48 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.010G010500 [exp] 74 / 5e-16 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.003G130900 [exp] 67 / 2e-14 AT1G63840 197 / 4e-65 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 69 / 3e-14 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.001G162000 [exp] 68 / 4e-14 AT1G53820 149 / 2e-43 RING/U-box superfamily protein (.1) Potri.014G170400 [exp] 66 / 7e-14 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019686 [exp] 76 / 1e-17 AT1G72310 62 / 1e-11 RING/U-box superfamily protein (.1) Lus10016427 [exp] 73 / 3e-16 AT1G72310 59 / 4e-11 RING/U-box superfamily protein (.1) Lus10016428 [exp] 71 / 5e-16 AT5G45290 59 / 2e-11 RING/U-box superfamily protein (.1.2) Lus10003617 [exp] 69 / 4e-15 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1) Lus10019685 [exp] 68 / 8e-15 AT5G43200 62 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10028773 [exp] 67 / 2e-14 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10032290 [exp] 67 / 3e-14 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10008235 [exp] 66 / 5e-14 AT5G20885 61 / 5e-12 RING/U-box superfamily protein (.1) Lus10024657 [exp] 66 / 6e-14 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10017510 [exp] 66 / 1e-13 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.007G086100.1 pacid=42766374 polypeptide=Potri.007G086100.1.p locus=Potri.007G086100 ID=Potri.007G086100.1.v4.1 annot-version=v4.1 ATGGCTTCTTTCTTCCAGCTCCTCTCTTACCTCTACACCATGGCCATAGCCCTTTTCGATCTCCTTCTTCTAAGAGCTGTCCTCCTAATCCGATCCGCCG TGCCCGGAAGTATGGTCACACATTCTGATAAACTTTTTCGCATAATTACCACTCAATATTTCAACCTCGTTGAAGAAAAGAACCCAACTATTTGTTACAG TGAAAACTTTAGGCATCATGAATCAAGAGAATGTGCGGTGTGTTTGTCTGAGTTTCTGGAAGGTGAAAGTTTAAGGAAATTGAAATGCAAGCACACTTTC CACAAGGATTGCCTTGACAAATGGCTAGAAGAATACCTGGCTACATGCCCACTTTGCAGGACTAGGGTTTTGCCGGAGGGACTTGTGGCCAATTATCGTC TGCTCAAAGATCATATAGAGAATGGCGGGAGCTATGATGACGCTACCTTCATGCTATCTGCATTATATGGTGATTTTTTACGTAGACTTTTCTAA
AA sequence Show only first row Show all	>Potri.007G086100.1 pacid=42766374 polypeptide=Potri.007G086100.1.p locus=Potri.007G086100 ID=Potri.007G086100.1.v4.1 annot-version=v4.1 MASFFQLLSYLYTMAIALFDLLLLRAVLLIRSAVPGSMVTHSDKLFRIITTQYFNLVEEKNPTICYSENFRHHESRECAVCLSEFLEGESLRKLKCKHTF HKDCLDKWLEEYLATCPLCRTRVLPEGLVANYRLLKDHIENGGSYDDATFMLSALYGDFLRRLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.007G086100 [exp]	0	1
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101400 [exp]	2.23	0.9383
AT5G15110			Pectate lyase family protein (...		Potri.004G124100 [exp]	3.16	0.9328
					Potri.001G060750 [exp]	5.00	0.9132
					Potri.001G189601 [exp]	22.09	0.7542
AT2G20875		EPF1	epidermal patterning factor 1 ...		Potri.013G136100 [exp]	24.06	0.9219
					Potri.002G098050 [exp]	27.12	0.9173
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G120901 [exp]	42.82	0.8538
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	54.89	0.8496
					Potri.006G102050 [exp]	57.34	0.8496
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.006G249800 [exp]	59.68	0.8496

Compare expression of checked genes

Potri.007G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.