Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10050 416 / 4e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 407 / 9e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 94 / 9e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 90 / 3e-20 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50690 84 / 2e-18 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 84 / 2e-18 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47350 82 / 2e-17 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT2G17845 81 / 2e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 80 / 3e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50700 81 / 4e-17 HSD1 hydroxysteroid dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G080900 [exp] 459 / 3e-164 AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 228 / 2e-73 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G102000 [exp] 95 / 3e-22 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.012G101900 [exp] 93 / 2e-21 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G100000 [exp] 88 / 1e-19 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048800 [exp] 87 / 4e-19 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.008G149201 [exp] 86 / 4e-19 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G099900 [exp] 85 / 2e-18 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.004G228533 [exp] 79 / 6e-17 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004925 [exp] 450 / 1e-160 AT5G10050 410 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 392 / 1e-137 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019684 [exp] 371 / 1e-129 AT5G10050 355 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 360 / 2e-125 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 345 / 2e-119 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040878 [exp] 327 / 2e-112 AT5G65205 308 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10011729 [exp] 229 / 2e-73 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031448 [exp] 101 / 3e-24 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 96 / 2e-22 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 90 / 4e-20 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.007G086600.1 pacid=42766118 polypeptide=Potri.007G086600.1.p locus=Potri.007G086600 ID=Potri.007G086600.1.v4.1 annot-version=v4.1 ATGGCAGCCTTATTCACTTCACATTGTGCAAACAACGAAGACGCACCTTTTACTTCTCATTCACTTCCTATAAATGCCCTCAAAATCTTTCCTTTTCAAT CTAAGTTTTTCAACTGCCAAAACCTGCTACCTATCAGAAAAACCACCCAAATGAGTAGTAATTCAATGGAATCTTATGGCCAACAAGTGGTTCTAATCAC TGGTTGCACTCAAGGAGGTATAGGCCATGCCTTGGCTCGTGAATTTGCTAACAACAATTGCCTTGTTGTGGCCACAGCCAGGTCTTTGATTTCCATGAGA GACCTTGATCAAGATAAGAGATTTTATCTCCAAGAATTGGATGTTTTGTCAGATGAAAGTGTGCAGCATGTTGTGTCAAACGTTGTTGAAAGATATGGTA GAGTGGATATCTTGGTTAACAATGCTGGAATTCAATGTGTTGGCCCTCTTGCTGAGGTCCCTTTATCTGCTATGCAAAACACTTTCAATACCAATGTCTA TGGGACAATGAGGCTGGTACAAGCTGTTGTTCCTCACATGGCATCTAGCAAGAAGGGAAAAATCGTAAATGTTGGAAGTGTTACTGTTATGGCTCCTGTT CCGTGGGCTGGAGTCTATACTGCAACCAAAGCGGCTCTTCATTCACTAACTGATACCTTGAGGCTGGAACTCAGGCCTTTAGGGATTGGTGTGATCAATG TTGTTCCTGGAGCTATTAAATCAAACATAGGAAATTCTGCCGTAGCCAGCTACAACCAGATGCCTGAGTGGAAGTTATACAGGCCATTTGAAGAAGCAAT ACGGGAGAGAGCGCATCTTTCACAAGGACTTAAGGCCACTCCCGCGGAAGAGTTTGCGAAGAAGACGGTTGCTGCCGTGCTAAAGGAAAACCCTCCGGCA TGGTTCTCCATTGGCCAATTCTCCACTGTGATGTCAATCATGTACCATTTGCCACTTTCTGTTAAAGATTTTATCCTAAGGCGAAAATTTAATTGCTGA
AA sequence Show only first row Show all	>Potri.007G086600.1 pacid=42766118 polypeptide=Potri.007G086600.1.p locus=Potri.007G086600 ID=Potri.007G086600.1.v4.1 annot-version=v4.1 MAALFTSHCANNEDAPFTSHSLPINALKIFPFQSKFFNCQNLLPIRKTTQMSSNSMESYGQQVVLITGCTQGGIGHALAREFANNNCLVVATARSLISMR DLDQDKRFYLQELDVLSDESVQHVVSNVVERYGRVDILVNNAGIQCVGPLAEVPLSAMQNTFNTNVYGTMRLVQAVVPHMASSKKGKIVNVGSVTVMAPV PWAGVYTATKAALHSLTDTLRLELRPLGIGVINVVPGAIKSNIGNSAVASYNQMPEWKLYRPFEEAIRERAHLSQGLKATPAEEFAKKTVAAVLKENPPA WFSIGQFSTVMSIMYHLPLSVKDFILRRKFNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G086600 [exp]	0	1
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.001G050900 [exp]	1.41	0.8313
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	1.73	0.8828
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Potri.017G135200 [exp]	4.12	0.7739
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Potri.001G470500 [exp]	9.79	0.7741
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.013G108900 [exp]	16.73	0.7301
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	18.33	0.8135
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Potri.001G225700 [exp]	19.62	0.7988
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.008G113900 [exp]	19.89	0.7792
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	22.44	0.7981
AT1G18340			basal transcription factor com...		Potri.005G176600 [exp]	30.98	0.7657

Compare expression of checked genes

Potri.007G086600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.