Plant FIBer expression Database

Potri.007G086900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39680 365 / 2e-116 SAP domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G080500
[exp]
819 / 0 AT4G39680 377 / 5e-122 SAP domain-containing protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016433
[exp]
425 / 1e-138 AT4G39680 349 / 4e-111 SAP domain-containing protein (.1.2)
Lus10019680
[exp]
331 / 3e-103 AT4G39680 72 / 5e-13 SAP domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0306 HeH PF02037 SAP SAP domain
CL0306 PF16294 RSB_motif RNSP1-SAP18 binding (RSB) motif
Representative CDS sequence
>Potri.007G086900.1 pacid=42765237 polypeptide=Potri.007G086900.1.p locus=Potri.007G086900 ID=Potri.007G086900.1.v4.1 annot-version=v4.1
ATGTCTTCACCATATCCAGTTCTTGGAACAAAACCCATAGACCAGTGGAAGGTTACTGAGTTAAAAGAAGAGCTTAAAAGGCGGAGATTGAAAACCAATG
GTTTGAAGGATGATTTGATTAGACGGTTGGATGACGCACTTCGTGTTGAGATGGAAAATGATGAAGCACTTCGCACTGAGAGGGAAAGTGAGGAAGCACT
ACGCAGCGAGCAGGAAAATGCTGCGAAGGTTGTGGTGGATGTGGATAATGGTGTTCATTTAGAGAACCCACCTATAGTAGGGGTGAAAATGGAAGAGGCA
GTAGCAGTTGTTGCTGAGATGGTTAAAGATGTCGTGGATGATGCCGCTAATAGAGATGAGAAGGTGGATAATGTTATGATTCAGGTTGGCACCAATGAGA
GTGTGAAAGCCATGGGTACAGGAGAACTTCAAGAAGAGGTCCAAATGGGTGGTAGTGATTCTTCTAGTACAGATGAGGATCTCAATGTTCATGCAACTAC
TGTGGAGACCAGTATTACTGTTACTGAGAGTGTGGTGTCAGAAGTAGCATTGAGTGTGAAAGCCACGGGTACAGGAGAACTTCAAGAAGAGTTCCAAATG
GTTGGTATTGATTCTTCTAGTTCAGATGAGGATCTCAATGTTCATGCAACTACTGTGGAGACCAGTATTACTGTTACTGAGAGTGTGGTGCCAGAAGTAG
CATTGAGTGGGCAAGATGTGCAAAATTCTGGAACACAGGAGGCAAATGAGAACTCAAATATCCAGCTGGAGAATGAGGGTTTAAAGCCCCAGCTGGAGAA
TGAGAATTTGAAGCCTCCAGACGAGGATGCCACGCTTGACTCTTCTGCTCCAGACAACCAGGTATCTGAGGTCAGCCCTAGTTTAGGGTTTCAAGTAAAA
TCTGATTCTATTTCTACTGATTCTGTATCAATTAATGAAAAGATTGAACTAAAGGATAATATAATTGCTGATAATGTCAAATTAGAACTAGATAATGTTA
AGCCAGAGATGGTGGAACCATCATTCAGTAATGTTGTCCCAGTTGGTGGTGAATCACATCCGATGGATGTTGAAGAGCCACAAGAGAAGAAGGAATCTGT
TGAAGAGAAAGATGACAGCAGTGGTACAAATGCATATATGAGAAAGAATAATGATAGTGTTGATGTGGGGTACTCGGAAAAGTTGAATTTAGACAGGAGT
TCTGGTGATGACTCCATGGAGGAAGATGTTTTAGAAAGTAAGCAAATTGATTCAAAGTATAATTCTGATGAAGTGGGTGATGTGAGTGAAAAGAAAAATG
AAGGGCCTGTTGTGAAGGAGGAAAATCTTGTTGGTGTTGCTGGGAAGGACTTATCTACTGATCAAAAGGAGGTCCATGTTGAGAATAAGATTCATCCAGT
TGTGCCTGTGGAGAAAAGAAAATTTAACGATCAAGAAATTGTTGGAAACTCGGAACCTTTGAAGCGGCAACGCAGATGGAATTCTGAGAACATCAAGGTT
CCTGAACAGCAAAGCTCAAATTTGACACCCACCACCACACCTAAGGATGGGTTTCAGCCTGCTCCTTTGAGACGCAACTTCTCCCGTTCTGAATCCTCTG
TTAGTGAGGAGGCACCCAAGGAACGTGTTGTTCCACCATCACAAAAACCTTTGACCAATTCTCTCAGAATTGATCGTTTTCTGCGTCCTTTTACTCTGAA
AGCTGTCCAAGAACTCCTGGGCAAAACTGGGACTGTCACAAGTTTTTGGATGGATCATATCAAAACCCATTGCTATGTTACGTATTCATCTGTGGAAGAA
GCCACGGAGACACGGAATGCTGTTTATAACCTACAATGGCCGCCAAATGGTGGACGCCTTTTAGTGGCCGAGTTTGTTGATCCTCAGGAAGTGAAAATGC
GGGTGGATGCTCCTCCTCAGTCTCCATCTACACCTGTCACTCCTAGTGCTGCTGCACCTGCTCCTCCCACCCTGCAGCCACAACCCTCTCCTCGTCAACA
GGTTTCTAGGCAGCAACTTCCACCCCCACCTTCCCTTCCACCTCCTCCACCACTCTCTAACCCACCCCATGCCAGGGAACGAGTTGATCTTCCTCCACCA
CCTCCACTTCCTGAGAAGCATGACCCACCCATTGTCACTCTGGATGACCTCTTCCGGAAAACCAAAACAGCTCCTCGAATCTACTACTTACCGTTATTGG
AAGAGCAAGTTGCAGCAAAACTTGCAGAACGTGGAAAAAACACCAAGCAATAG
AA sequence
>Potri.007G086900.1 pacid=42765237 polypeptide=Potri.007G086900.1.p locus=Potri.007G086900 ID=Potri.007G086900.1.v4.1 annot-version=v4.1
MSSPYPVLGTKPIDQWKVTELKEELKRRRLKTNGLKDDLIRRLDDALRVEMENDEALRTERESEEALRSEQENAAKVVVDVDNGVHLENPPIVGVKMEEA
VAVVAEMVKDVVDDAANRDEKVDNVMIQVGTNESVKAMGTGELQEEVQMGGSDSSSTDEDLNVHATTVETSITVTESVVSEVALSVKATGTGELQEEFQM
VGIDSSSSDEDLNVHATTVETSITVTESVVPEVALSGQDVQNSGTQEANENSNIQLENEGLKPQLENENLKPPDEDATLDSSAPDNQVSEVSPSLGFQVK
SDSISTDSVSINEKIELKDNIIADNVKLELDNVKPEMVEPSFSNVVPVGGESHPMDVEEPQEKKESVEEKDDSSGTNAYMRKNNDSVDVGYSEKLNLDRS
SGDDSMEEDVLESKQIDSKYNSDEVGDVSEKKNEGPVVKEENLVGVAGKDLSTDQKEVHVENKIHPVVPVEKRKFNDQEIVGNSEPLKRQRRWNSENIKV
PEQQSSNLTPTTTPKDGFQPAPLRRNFSRSESSVSEEAPKERVVPPSQKPLTNSLRIDRFLRPFTLKAVQELLGKTGTVTSFWMDHIKTHCYVTYSSVEE
ATETRNAVYNLQWPPNGGRLLVAEFVDPQEVKMRVDAPPQSPSTPVTPSAAAPAPPTLQPQPSPRQQVSRQQLPPPPSLPPPPPLSNPPHARERVDLPPP
PPLPEKHDPPIVTLDDLFRKTKTAPRIYYLPLLEEQVAAKLAERGKNTKQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39680 SAP domain-containing protein ... Potri.007G086900
[exp]
0 1
AT1G59760 AtMTR4 homolog of yeast MTR4, RNA hel... Potri.004G228700
[exp]
1.41 0.9077
AT4G21710 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-dir... Potri.004G043200
[exp]
1.73 0.9001
AT4G01570 Tetratricopeptide repeat (TPR)... Potri.002G182900
[exp]
3.16 0.9012
AT4G09980 EMB1691 EMBRYO DEFECTIVE 1691, Methylt... Potri.015G147200
[exp]
8.48 0.8903
AT2G27100 C2H2ZnF SE C2H2 zinc-finger protein SERRA... Potri.004G196400
[exp]
9.79 0.8841
AT5G64390 HEN4 HUA ENHANCER 4, RNA-binding KH... Potri.017G042500
[exp]
9.89 0.8717
AT3G11540 SPY SPINDLY, Tetratricopeptide rep... Potri.006G208900
[exp]
13.22 0.8822 Pt-SPY.2
AT5G20490 XI-17, ATXIK, X... MYOSIN XI-17, MYOSIN XI K, Myo... Potri.001G199200
[exp]
13.60 0.8844 MYA1.1
AT4G35800 RNA_POL_II_LSRN... RNA polymerase II large subuni... Potri.005G107600
[exp]
15.74 0.8810 Pt-RPB1.1
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Potri.009G168100
[exp]
16.73 0.8619

Potri.007G086900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.