Plant FIBer expression Database

Potri.007G087100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39690 395 / 2e-129 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G080200
[exp]
867 / 0 AT4G39690 424 / 3e-140 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022509
[exp]
362 / 1e-116 AT4G39690 416 / 1e-137 unknown protein
Lus10016813
[exp]
356 / 5e-115 AT4G39690 397 / 6e-131 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09731 Mitofilin Mitochondrial inner membrane protein
Representative CDS sequence
>Potri.007G087100.2 pacid=42765748 polypeptide=Potri.007G087100.2.p locus=Potri.007G087100 ID=Potri.007G087100.2.v4.1 annot-version=v4.1
ATGCTTCGAAGGTCCCTTTTGGAGTTATCAAGTCGTCGTCAATCATTAAGCAGGATACCGAGGCAGATTACTTCTCAGCGTGTGTCCCCCTTCCTTTCTT
CAAGGAAGGAATTCTCAACCACTTTCCAGAAGAATGCATCCCCAAACGGTGATCAGAATGATAAATCAGAGAGGACGGGTTCACTTTTAGCAAAAGGCTT
AGGTGCAGCTCTTGTTGTTGGGACATGTTATTATGTAGGTTGGTTAGACCCATTTATTGAATTAATTGGTAAAAAGAAGCAAGGTTATGTTAACTCGGGC
GGGGATGGCATTGATCATGAAGATGTGTCAGCCATGAGTGAAGAGGCTAATAAATTAAGCCATTTTATAGAGGAGGCTGCGCAAAAGGTTCAAAGTCAGA
CAGATCTTCCTAATGTTGAAACCAAGAAGGACAAGGTTGAAACTCGTATAGATGTTCCCCATGTTGAAACTGAGCAGAAGGTTGAAACTCCTTCGGATCT
TCCTCATGTTGAAACCGAGCAGAAGGCTGACACTTTCAGTAAAACAGAACCTGATCATCAGTACCAGGTAGACCATGGGACAATCTCTGTTGAGGAGAGG
CATGAACCAAAATTTTCTCAATGTATAGGTTCTGAAGGCAGTCTTGGCGTGGAAAGCCCGGAGTTGAAAACTACTGAAGAATCGAATGAGGGAACTCAAG
TTACAGAAGTACAACCTCAGGATGCAACTGTTCCTGTAGAGAGGGAAATAAAAGCAGTACAAACTCAGAATGTTACTTCAGAAGACAGATCTGAGCAGGA
TGCCTTTGGTGAAGGTGTAGGAACATCAAGTCTACTTGATTCATACCATCTCGATGACGAAGCTGAAAAGAACACTGCAACAGAGGGCCTTGGAGAACAG
GCTATTGTTAGTGCCATAGAAGAACTGAATGAGGGTTACCTAACTAAAGATGGAAAGTTAGTTATTGATTTTCTCGAAGCAATTCATGCAGCTGAAAAGA
GGCAAGCTGATTTGGATGCCCTTGCTTTTGCTGAAGAAAAAAGAGCACTGAAGGAGAAGTATGAAAAAGAACTGAGGGATTTAAGGGCTAGGGAACTTAT
GCATGTTGAAAAGGCAGCAATATTGGATAAGGAAATAAAAAGAGAGAGAGCCAAAGCTGCAGCTGCAATCAAGACACTTCAAGAAAGGATGGAGGAAAAA
CTTAGGGTGGAGCTTGAACAGAAGGAAAATGAAGTGGAAATGAAGCTGCAAAAGTTGTCGGAGTTCGCAAAAGCAGAATTGTTGGCTGCAAGTGCACGGG
AGAAGGCAGCACAGATTGAAAAGATGACTGAAGCAAATCTCAATATAAATGCCTTGTGCATGGCATTCTATGCACGATCTGAAGAGGCTCGTCAAATTCA
CTCTGTTCACAAGCTTGCTCTTGGAGCGCTTGCATTAGAAGATGCACTTTACAGAGGACTACCGATTCAGCAAGAGCTAGATGCTTTAAACACCTATCTT
GAGGCCATTGATAAGGACTCACTTTTACTTCTGGTTCTATCAAACCTTCCTGAAGAAACAAAGCACCATGGTCCTGATACTCTATTGGAATTGAATCAGA
AGTTCAATGTCATGAAAGGGAATCTAAGACATTATATTTTGATCCCACCTGGTGGTGGTGGCATCTTGGCTCACGCTTTGGCACATGTTGCATCCTGGTT
GAGGTTCAAAGAAGTCGAACCCTCTGGCGACGGTATTGAATCTATTATTAGTAGAGTTGAGGGTTTCCTTGCTGAGGGAAAGCTTGCTGAAGCAGCAGAT
GCTCTCCAAAAAGGTGTCCAAGGCAGCCAGGCAGAAGAGATAGCTGGTGATTGGGTGAGGCGAGCAAGGAACAGAGCTATCACAGAGCAAGCTCTAACTG
TACTCCAGTCATATGCTACATGCATCGGCCTTACTCAATGA
AA sequence
>Potri.007G087100.2 pacid=42765748 polypeptide=Potri.007G087100.2.p locus=Potri.007G087100 ID=Potri.007G087100.2.v4.1 annot-version=v4.1
MLRRSLLELSSRRQSLSRIPRQITSQRVSPFLSSRKEFSTTFQKNASPNGDQNDKSERTGSLLAKGLGAALVVGTCYYVGWLDPFIELIGKKKQGYVNSG
GDGIDHEDVSAMSEEANKLSHFIEEAAQKVQSQTDLPNVETKKDKVETRIDVPHVETEQKVETPSDLPHVETEQKADTFSKTEPDHQYQVDHGTISVEER
HEPKFSQCIGSEGSLGVESPELKTTEESNEGTQVTEVQPQDATVPVEREIKAVQTQNVTSEDRSEQDAFGEGVGTSSLLDSYHLDDEAEKNTATEGLGEQ
AIVSAIEELNEGYLTKDGKLVIDFLEAIHAAEKRQADLDALAFAEEKRALKEKYEKELRDLRARELMHVEKAAILDKEIKRERAKAAAAIKTLQERMEEK
LRVELEQKENEVEMKLQKLSEFAKAELLAASAREKAAQIEKMTEANLNINALCMAFYARSEEARQIHSVHKLALGALALEDALYRGLPIQQELDALNTYL
EAIDKDSLLLLVLSNLPEETKHHGPDTLLELNQKFNVMKGNLRHYILIPPGGGGILAHALAHVASWLRFKEVEPSGDGIESIISRVEGFLAEGKLAEAAD
ALQKGVQGSQAEEIAGDWVRRARNRAITEQALTVLQSYATCIGLTQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39690 unknown protein Potri.007G087100
[exp]
0 1
AT3G47890 Ubiquitin carboxyl-terminal hy... Potri.017G089250
[exp]
10.29 0.7905
AT1G76890 Trihelix AT-GT2, GT2 Duplicated homeodomain-like su... Potri.018G049301
[exp]
20.78 0.7048
AT5G19580 glyoxal oxidase-related protei... Potri.006G160800
[exp]
21.16 0.7855
AT1G32930 Galactosyltransferase family p... Potri.001G450200
[exp]
27.33 0.7864
AT1G77330 2-oxoglutarate (2OG) and Fe(II... Potri.002G078600
[exp]
36.56 0.7764 ACO1
AT4G21780 unknown protein Potri.011G000400
[exp]
41.23 0.7541
AT4G28850 ATXTH26, XTH26,... xyloglucan endotransglucosylas... Potri.006G160700
[exp]
45.97 0.7660
AT3G15620 UVR3 UV REPAIR DEFECTIVE 3, DNA pho... Potri.003G060000
[exp]
47.11 0.7659
AT2G20470 AGC (cAMP-dependent, cGMP-depe... Potri.005G226700
[exp]
48.27 0.7694
AT5G40710 C2H2ZnF zinc finger (C2H2 type) family... Potri.001G336500
[exp]
49.07 0.6804

Potri.007G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.