Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22125 3229 / 0 POM2, CSI1 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) AT1G77460 1705 / 0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) AT1G44120 1305 / 0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1) AT3G46510 73 / 2e-12 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G23140 69 / 3e-11 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT2G28830 65 / 6e-10 AtPUB12 PLANT U-BOX 12 (.1) AT5G58680 60 / 8e-09 ARM repeat superfamily protein (.1) AT3G54790 60 / 2e-08 ARM repeat superfamily protein (.1.2) AT5G67340 57 / 1e-07 ARM repeat superfamily protein (.1) AT1G71020 57 / 1e-07 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G080100 [exp] 3862 / 0 AT2G22125 3215 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) Potri.005G180100 [exp] 1768 / 0 AT1G77460 2772 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Potri.009G029600 [exp] 71 / 8e-12 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.007G051000 [exp] 69 / 2e-11 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 69 / 3e-11 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.001G238500 [exp] 69 / 3e-11 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.005G225400 [exp] 68 / 5e-11 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 66 / 3e-10 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G113900 [exp] 63 / 3e-09 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019679 [exp] 3455 / 0 AT2G22125 3364 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) Lus10042730 [exp] 1491 / 0 AT1G77460 2385 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Lus10029691 [exp] 187 / 8e-53 AT1G77460 265 / 6e-81 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Lus10029690 [exp] 97 / 3e-22 AT1G77460 183 / 1e-53 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Lus10011514 [exp] 73 / 3e-12 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 73 / 3e-12 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016565 [exp] 69 / 3e-11 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 67 / 2e-10 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10024899 [exp] 62 / 7e-09 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10043471 [exp] 59 / 4e-08 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.007G087200.6 pacid=42766829 polypeptide=Potri.007G087200.6.p locus=Potri.007G087200 ID=Potri.007G087200.6.v4.1 annot-version=v4.1 ATGGCGGCTACACTTGCTTGGAGGTTATCTGCTACCAATGGCAGCAGCCTGGCCACTGCTGATCTGGAAAAAAATGGCGATCTAAAAATTCAAGATTCAG AGCCACCAACTCCCCATTCAGTTATGAAGATGGGTGTAAGAGACCGTACTAGTAGCATGGAGGATCCAGATGGCACACTAGCAAGTGTAGCACAATGCAT TGAGCTGCTACGTCAGAGTTCCTCATCTGTACAAGAGAAAGAGTATGCATTGAGACAGTTGCGAGAACTTGTTGAGACACGTGAAAATGCATTCAGTGCT GTGGGATCTCACTCTCAAGCAGTTCCAGTGCTTGTTTCTCTTCTCCGGTCAGGATCATTGGGAGTGAAGATACAGGCTGCTACTGTCCTAGGTTCTCTCT GCAAGGAGAATGAACTAAGGGTAAAAGTCTTACTTGGAGGATGCATCCCACCATTGCTTGGTCTCCTCAAGTCCAGCTCCGCAGAAGGGCAAATTGCAGC GGCAAAGACAATATATGCCGTTTCCCAGGGTGGTGCTAAGGATCATGTTGGCTCAAAAATTTTTTCAACTGAAGGAGTTGTGCCTGCACTCTGGGAGTTG CTTCGAAACGGGCTCAAGACGGGCAACTTAGTTGATAACTTGTTGACTGGAGCTTTAAAAAACCTCTCCAGCAGCACTGAGGGATTTTGGTCTGCAACAA TACAAGCTGGAGGAGTGGATATACTAGTGAAGTTGCTCACAACAGGACAGTCAGACACACAAGCAAATGTGTGCTTTCTTCTTGCATGCATGATGATGCA AGATGCATCTATTTGTTTCAAGGTATTGGCTGCAGAGGCTACTAAACAGCTGCTCAAGCTGTTAGGACCTGGCAATGAAGCCTCTGTTAGAGCAGAAGCT GCTGGTGCCCTTAAGTCTCTTTCTGCACAGTGCAAAGATGCAAGACAAGAGATAGCTAAATCTAATGGCATTCCTGCTCTGATAAACGCGACAATAGCTC CTTCAAAAGAATTCATGCAGGGGGAGTATGCCCAAGCATTACAGGAAAATGCAATGTGTGCTCTTGCAAATATTTCTGGTGGCTTGTCATTTGTCATCTC AAGCCTTGGTCAAAGCCTTGAATCATGCTCTTCACCTGCCCAGGCTGCTGACACTTTAGGAGCTTTGGCTTCAGCTCTGATGATATATGATAGTAAAGCT GAATCCACTAGGGCATCAGATCCTGTGGCTATTGAACAGACTTTAGTTAATCAGTTCAAGCCTCGTTTACCATTTCTTGTGCAAGAACGTACCATAGAAG CATTAGCTAGTTTGTATGGGAATGCCATCCTCTCAGTTAAACTTGTGAATTCTGAAGCAAAACGGTTGCTTGTTGGTTTGATTACGATGGCTATCAATGA AGTTCAGGATGAGCTTGTAAGAGCTCTTCTCACACTTTGCAATAATGAAGGCAGTCTATGGCGTGCGCTTCAAGGACGTGAAGGGGTCCAGCTATTGATA TCTCTTCTTGGCCTTTCATCGGAACAGCAGCAGGAATGTGCAGTGGCATTGCTTTGCCTTCTATCTAATGAAAACGACGAAAGCAAGTGGGCCATCACTG CTGCTGGTGGTATACCTCCCCTTGTCCAAATTCTAGAGACAGGATCTGCAAAAGCCAAGGAAGATTCTGCTACAATCCTTAGGAACTTATGCAATCACAG TGAAGATATACGTGCATGTGTTGAAAGTGCTGATGCTGTTCCTGCATTATTATGGCTACTGAAGAATGGGAGTCCCAATGGGAAAGAAATTGCAGCAAAG ACTTTAAATCATTTGATCCATAAATCCGATACAGCAACTATTAGTCAGCTCACTGCATTGTTAACCAGTGATCTACCTGAATCAAAAGTGTATGTCCTGG ATGCTCTAAGAAGTATGCTTTCTGTGGTTCCCTTGAGTGATGTACTACGGGATGGCAGTGCTGCAAATGACGCGATTGAGACAATGATTAAGATATTGAG CTCTACTAAAGAAGAGACTCAGGCCAAGTCTGCCTCTGCTTTGGCTGGAATTTTTGAAACCAGAAAGGATTTACGTGAAAGCAGCATTGCTGTTAAAACA CTTTGGTCAGTGATGAAGTTGCTGAATGTTGAATCGGAAAACATCTTAGCAGAGTCATCTCATTGCCTTGCTTCAGTATTTCTTTCAATTAAAGAGAACC GGGAAGTGGCTGCTGTTGGTCGTGATGCATTGTCTCCTTTAATTGCACTTGCTAACTCATTGACTTTGGAAGTAGCTGAACAGGCAACATGTGCTCTTGC AAATCTTATTTTGGATGGTGAAGTTTCAGAAAAAGCAATTCCAGATGAAATTATTGTGCCAGCGACTAGGGTTTTGCGTGAAGGAACAATTTCTGGGAAG ACCCATGCAGCAGCAGCAATTGCTCGTCTCCTTCATTCTCGTAGAATTGATAATTCCATAACTGATTGTGTCAATCGTGCAGGAACAGTACTTGCATTAG TTTCTTTTCTAGAATCTGCAAGTGGTGGATCTGTTCCCACATCAGAGGCCCTAGCTGCACTTGCTATTCTGTCAAGGTCAGAAGGGACTAGCGGACACAT CAAACCAGCATGGGCAGTTTTAGCTGAATTTCCAAAACGCATAACCCCAATAGTTTTGTCGATTGCAGATGCAACACCCTTGTTGCAGGATAAGGCTATT GAAATATTATCGAGACTTTGCCGAGATCAGCCTTTTGTTTTAGGAGAGGCAGTTGCTTGTGCCTCTGGATGTATACCTTCAGTGGCTAGAAGGGTGATCA ATTCCACGAACCCAAAGGTCAAAATTGGAGGAGCTGCACTTCTTATTTGTGCTGCGAAAGTTAGTCATCAAAGAGTGGTGGAAGATCTTAACCAATCGAA TTCATGTAGTCATCTTATTCAATCACTTGTCACAATGCTTTGTTCTGCAGATGCTTCTCCTTCAGAAGACCTGGTTGATGATGACAAGGAGGTCATTAGC ATCCACAGATATGCTAAAGAAGGTGAGAATGGTGAATCTCATAAAGGAACAGCAGTAATTTATGGTTATAACTTAGCTGTTTGGCTACTTTCGGTTCTTG CCTGCCATGATGAGAAAAGTAAAATTGTTATAATGGAGGCCGGAGCAGTTGAAGTCCTCACCAACAGAATCTCCAGTTGTATTTCGCACTACAGTCAGAG TGATTTTAGTGAAGACAGCAGCATATGGATTTGTGCTCTACTGCTAGCTATTCTGTTTCAAGATAGAGACATCATACGTGCACATGCAACCATGAAATCT ATACCAGTACTTGCAAGTATGTTGAAGTCAGAGGAATCTGCAAACAGATATTTTGCTGCACAGGCAATAGCCAGCCTAGTGTGTAATGGTAGTAGGGGAA CTCTTCTGTCTGTTGCAAATTCTGGGGCAGCAGGTGGTCTTATCTCCTTACTTGGCTGTGCTGATGGTGATATATCTGATCTTCTGGAATTGTCTGAAGT GTTTGCTTTAGTGCGTTATCCGGACCAAGTTGCCCTAGAGAGGTTATTCAGAGTTGAAGACATTAGAGTTGGTGCTACATCTCGCAAAGCAATACCTGCT CTTGTTGATCTACTCAAACCAATTCCAGATCGTCCTGGGGCACCTTTTCTAGCATTAGGACTTCTAAATCAGCTTGCAAAAGACTGTCCACCAAATAAGA CTGTTATGGTTGAATCAGGGGTTTTGGAGGCCCTGACTAAGTATCTTTCACTTGGTCCACAAGATGCAACCGAGGAAGCTGCAACTGATCTGTTAGGGAT CCTATTTAATAGTGCTGAGATTCGGAGACATGAAGCTGCTTTTGGTGCTGTCAGTCAACTTGTTGCTGTCCTGCGCCTGGGTGGAAGAGCTGCAAGGTAT AGTGCTGCTAAAGCATTGGAAAGCTTGTTTTCTGCTGATCACATCAGGAATGCAGACACTGCCCGACAAGCTGTCCAACCCTTGGTGGAAATTCTTAATA CTGGTCTAGAGAAAGAGCAGCATGCTGCTATAGCTGCATTGGTTAGGTTATTGAGTGAAAACCCATCAAGAGCCCTTGCAGTTGCTGATGTTGAAATGAA TGCAGTGGATGTACTTTGCAGGATCCTCTCGTCAAATTGCTCAATGGAGCTGAAGGGCGATGCTGCAGAGTTGTGCGGTGTTTTGTTTGGAAATACAAGA ATCAGGTCTACAATGGCTGCAGCTCGCTGTGTTGAGCCTTTGGTCTCTCTCCTTGTAACTGAGTTCAGTCCTGCTCAGTATTCAGTTGTCTGTGCATTGG AAAAACTTGTTGATGATGAACAACTGGCAGAACTAGTTGCTGCACATGGAGCAGTTATTCCTCTTGTTGGCCTTCTCTATGGTAGGAACTACATGCTTCA TGAGGCTATCTCCAGAGCACTTGTGAAGTTGGGGAAAGACAGGCCCGCTTGTAAAATGGAAATGGTAAAAGCTGGAGTAATTGAAAGCATACTTGATATC CTCCATGAAGCACCAGATTTTCTCGGTGCAGCATTTGCAGAATTGCTCAGAATATTGACCAACAATGCTAGCATTGCCAAGGGGCCTTCTGCTGCAAAAG TGGTTGAGCCCCTTTTCCTGCAGCTGACGAGACCAGAATTTGGGCCTGATGGACAACATAGTGCTTTACAGGTTCTAGTTAATATTCTGGAACATCCACA GTGCCGTGCAGATTATACCCTCACCTCTCACCAAACTATTGAGCCACTTATCCCCTTGCTTGATTCTCCAGCTCCGGCAGTGCAACAGCTGGCTGCTGAG CTCCTCTCTCATCTGCTCATGGAAGAACATCTTCAGAAGGATTCAGTGACACAGCAAGTAATTGGTCCCCTTATACGGGTTCTTGGTTCTGGCATACACA TCTTGCAGCAGAGAGCTGTAAAGGCTCTTGTTAGCATTGCACTAATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTGAGTGAGTTGTCCAAAGTTAT ATTGCAAGCTGATCCTTCTCTTCCCCATGCCTTGTGGGAATCTGCTGCTTCTGTTTTGGCTAGCATTTTACAGTTTAGTTCTGAATTTTATTTGGAAGTT CCTGTAGCTGTCTTGGTAAGGTTGCTCCGTTCTGGCTTAGAAAGCACTGTGGTTGGTGCATTGAATGCTCTTTTGGTGTTAGAAAGTGATGATGGAACTA GTGCTGAAGCTATGGCTGAAAGCGGTGCCATAGAGGCTCTTTTGGAACTTCTCAGAAGCCATCAGTGTGAGGAAACAGCTGCAAGGTTGCTTGAAGTCCT ACTTAACAATGTGAAAATCAGAGAATCAAAAGTTACTAAATCTGCGATCTTGCCATTATCACAATACCTCTTGGACCCCCAAACTCAAGCACAACAGGCA AGATTATTAGCAACTTTGGCACTTGGTGATCTATTCCAGAATGAGGGCCTGGCTCGAAGTACTGATGCTGTGTCAGCTTGTCGTGCTCTAGTCAATGTGC TTGAAGAGCAACCTACAGAAGAAATGAAAGTAGTAGCAATATGTGCTTTGCAAAACCTGGTCATGTATAGCCGATCCAATAAAAGAGCTGTTGCAGAGGC TGGTGGTGTTCAAGTTGTATTGGATGTAATTGGTTCAAGTGATCCCGATACATCTGTCCAGGCTGCAATGTTTGTTAAACTCCTCTTCTCCAATCACACC ATTCAAGAGTATGCATCCAGTGAAACAGTCAGAGCCATAACTGCTGCTATTGAAAAGGATTTATGGGCCACTGGGACAGTGAATGAGGAGTATCTCAAAG CTCTAAATGCCCTTTTTAGCAACTTCCCAAGGTTGAGAGCCACCGAGCCTGCAACACTCAGCATACCCCATCTGGTTACATCTCTCAAGACAGGATCAGA AGCAACTCAAGAAGCTGCCTTGGATGCTCTTTTTCTTCTTAGGCAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCAAGAGCTCAATCTATTGCTGCTGCA GATGCAATCCCCTTGTTGCAATACTTGATTCAGTCTGGCCCACCTCGATTTCAGGAGAAGGCTGAATTTCTGCTGCAGTGTTTGCCAGGGACACTCGTGG TTATTATCAAGCGTGGAAACAACATGAAGCAGTCGGTGGGGAACCCTAGTGTTTATTGCAAGATTACACTTGGAAGTACACCACCAAGGCAAACAAAGGT CGTATCAACTGGTCCCAATCCGGAGTTTGATGAGAGCTTTTCATGGTCCTTCGAGAGTCCTCCAAAAGGCCAAAAGCTTCACATCTCTTGCAAAAATAAG AGTAAAATGGGGAAGAGTTCTTTCGGCAAAGTAACAATCCAGATTGATCGGGTTGTCATGCTTGGAGCAGTAGCTGGGGAATACACTCTGCTGCCACAAA GCAAGAGCGGACCCTCAAGGAATTTGGAAATTGAATTTCAGTGGTCAAACAAGTAA
AA sequence Show only first row Show all	>Potri.007G087200.6 pacid=42766829 polypeptide=Potri.007G087200.6.p locus=Potri.007G087200 ID=Potri.007G087200.6.v4.1 annot-version=v4.1 MAATLAWRLSATNGSSLATADLEKNGDLKIQDSEPPTPHSVMKMGVRDRTSSMEDPDGTLASVAQCIELLRQSSSSVQEKEYALRQLRELVETRENAFSA VGSHSQAVPVLVSLLRSGSLGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDHVGSKIFSTEGVVPALWEL LRNGLKTGNLVDNLLTGALKNLSSSTEGFWSATIQAGGVDILVKLLTTGQSDTQANVCFLLACMMMQDASICFKVLAAEATKQLLKLLGPGNEASVRAEA AGALKSLSAQCKDARQEIAKSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSFVISSLGQSLESCSSPAQAADTLGALASALMIYDSKA ESTRASDPVAIEQTLVNQFKPRLPFLVQERTIEALASLYGNAILSVKLVNSEAKRLLVGLITMAINEVQDELVRALLTLCNNEGSLWRALQGREGVQLLI SLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAK TLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVPLSDVLRDGSAANDAIETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKT LWSVMKLLNVESENILAESSHCLASVFLSIKENREVAAVGRDALSPLIALANSLTLEVAEQATCALANLILDGEVSEKAIPDEIIVPATRVLREGTISGK THAAAAIARLLHSRRIDNSITDCVNRAGTVLALVSFLESASGGSVPTSEALAALAILSRSEGTSGHIKPAWAVLAEFPKRITPIVLSIADATPLLQDKAI EILSRLCRDQPFVLGEAVACASGCIPSVARRVINSTNPKVKIGGAALLICAAKVSHQRVVEDLNQSNSCSHLIQSLVTMLCSADASPSEDLVDDDKEVIS IHRYAKEGENGESHKGTAVIYGYNLAVWLLSVLACHDEKSKIVIMEAGAVEVLTNRISSCISHYSQSDFSEDSSIWICALLLAILFQDRDIIRAHATMKS IPVLASMLKSEESANRYFAAQAIASLVCNGSRGTLLSVANSGAAGGLISLLGCADGDISDLLELSEVFALVRYPDQVALERLFRVEDIRVGATSRKAIPA LVDLLKPIPDRPGAPFLALGLLNQLAKDCPPNKTVMVESGVLEALTKYLSLGPQDATEEAATDLLGILFNSAEIRRHEAAFGAVSQLVAVLRLGGRAARY SAAKALESLFSADHIRNADTARQAVQPLVEILNTGLEKEQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR IRSTMAAARCVEPLVSLLVTEFSPAQYSVVCALEKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPACKMEMVKAGVIESILDI LHEAPDFLGAAFAELLRILTNNASIAKGPSAAKVVEPLFLQLTRPEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQTIEPLIPLLDSPAPAVQQLAAE LLSHLLMEEHLQKDSVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVSELSKVILQADPSLPHALWESAASVLASILQFSSEFYLEV PVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRESKVTKSAILPLSQYLLDPQTQAQQA RLLATLALGDLFQNEGLARSTDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDVIGSSDPDTSVQAAMFVKLLFSNHT IQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNALFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAA DAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKITLGSTPPRQTKVVSTGPNPEFDESFSWSFESPPKGQKLHISCKNK SKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPQSKSGPSRNLEIEFQWSNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.007G087200 [exp]	0	1
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.004G152400 [exp]	2.82	0.9220	ALPHA.13
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	3.46	0.9316
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.008G038900 [exp]	4.69	0.9042
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.006G145700 [exp]	5.09	0.9096
AT5G06970			Protein of unknown function (D...		Potri.001G030100 [exp]	5.91	0.9179
AT2G25800			Protein of unknown function (D...		Potri.006G238200 [exp]	5.91	0.8977
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	6.48	0.9290
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.018G081300 [exp]	7.41	0.8890
AT2G21300			ATP binding microtubule motor ...		Potri.004G162800 [exp]	8.12	0.9116
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.011G131900 [exp]	8.36	0.9118	ATK2.1

Compare expression of checked genes

Potri.007G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.