Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22250 643 / 0 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G77670 181 / 9e-52 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G80360 120 / 6e-30 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28420 98 / 1e-21 Tyrosine transaminase family protein (.1.2) AT5G36160 94 / 2e-20 Tyrosine transaminase family protein (.1) AT5G53970 91 / 2e-19 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT2G20610 91 / 3e-19 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT2G24850 90 / 3e-19 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 81 / 2e-16 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT1G01480 81 / 3e-16 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079200 [exp] 839 / 0 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 176 / 1e-49 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 175 / 2e-49 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 157 / 5e-43 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G177000 [exp] 114 / 8e-28 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G137900 [exp] 96 / 2e-21 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 96 / 3e-21 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 95 / 8e-21 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014100 [exp] 95 / 8e-21 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023080 [exp] 741 / 0 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10032388 [exp] 738 / 0 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10004089 [exp] 181 / 1e-51 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 177 / 1e-50 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018962 [exp] 156 / 3e-42 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10033659 [exp] 112 / 1e-26 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10023117 [exp] 107 / 3e-25 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039861 [exp] 106 / 9e-25 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017703 [exp] 103 / 1e-23 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017934 [exp] 101 / 4e-23 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.007G088426.1 pacid=42766169 polypeptide=Potri.007G088426.1.p locus=Potri.007G088426 ID=Potri.007G088426.1.v4.1 annot-version=v4.1 ATGGCAGCTACTTCAACTTCAACCAGTTATCGTCTTGGTTTCCGACTCCACCAACAACTCGCACCCTGTTCAGGTTCTCACCCTCAAACCTCCGGAGCCG TGTCCTTTCTTTCAGGGTCTCACAATTTCTCCTTCAAATCGTTGGAGACTACTAGACGATCACAGTTGTCTAGAATAAGTGTAGTTGTGAAGGCAGAAAG TAGGTCTGAAGAGATGCAACTCGATATTTCTTTGAGTCCAAGGGTGAATGCTGTAAAACCTTCAAAGACAGTGGCCATAACGGACCAGGCTACTGCGCTT GTACAAGCTGGGGTTCCTGTTATTCGTTTGGCTGCTGGAGAGCCTGATTTTGATACACCGGTTGTAATAGCAGAGGCTGGAATAAATGCAATTCGCGAAG GTTTCACAAGGTATACTCCAAATGCTGGTACACAGGAGCTTCGAGTTGCAATTTGTCATAAGCTGAAGGAGGAGAACGGTATCTCTTATACACCTGACCA AATTTTAGTTAGCAATGGTGCCAAGCAGAGTATATATCAAGCAATGCTTGCAGTTTGCTCTCCTGGCGATGAGGTTATTATTCCTGCACCATTTTGGGTG AGTTACCCAGAAATGGCGAGGCTGGCTGATGCAACCCCAGTGATTCTTCCAACATCAATCTCTGAAAACTTTCTCTTGGATCCAAAGCTACTTGAATCAA AACTGAGTGCAAAGTCAAGGCTGTTGATTCTTTGTTCTCCATCTAACCCAACAGGATCAGTTTATTCCAAGAAATTGCTTGAAGAGATTGCACGGATTGT AGCGAAACATCCTAGGCTTTTGGTCTTGTCTGATGAGATATACGAACACATAATATATGCACCTGCTACTCACATAAGCTTTGCATCTTTGCCCGGCATG TGGGAAAGGACTTTGACAGTGAACGGATTTTCTAAGGCCTTTGCAATGACTGGTTGGAGACTGGGGTATATTGCTGGTCCCAAGCACTTTGTTGCAGCGT GTAATAAGATACAGAGTCAGTTTACATCAGGTGCCAGCAGTATATCTCAAAAGGCAGGCGTTGCTGCACTAGGACTCGGCTATGCTGGTGGGGAAGCAGT TTCTACCATGGTGAAAGCATTCATGGAGCGGAGAGATTTCTTGATTAGAAGCTTTGGAGAAATGGAAGGTGTTAGGATGTCAGAACCTCAGGGAGCATTT TATCTTTTCATTGATACCAGCTCGTACTATGGAACAGAGGCTGAAGGTTTTGGTAAAATCGAGGACTCTGACTCCCTTTGCCGTTACCTGTTGGATCAAG CCCAGGTTGCTCTAGTCCCAGGGGTTGCATTTGGAGATGACAGCTGCATACGTATCTCATATGCAGCATCTCTGACCACCTTACAGGAGGCTGTAGGGAG AATTAAGAAGGCTCTACTCCCACTCAAGTCTGCTGTCCCTGTTTAA
AA sequence Show only first row Show all	>Potri.007G088426.1 pacid=42766169 polypeptide=Potri.007G088426.1.p locus=Potri.007G088426 ID=Potri.007G088426.1.v4.1 annot-version=v4.1 MAATSTSTSYRLGFRLHQQLAPCSGSHPQTSGAVSFLSGSHNFSFKSLETTRRSQLSRISVVVKAESRSEEMQLDISLSPRVNAVKPSKTVAITDQATAL VQAGVPVIRLAAGEPDFDTPVVIAEAGINAIREGFTRYTPNAGTQELRVAICHKLKEENGISYTPDQILVSNGAKQSIYQAMLAVCSPGDEVIIPAPFWV SYPEMARLADATPVILPTSISENFLLDPKLLESKLSAKSRLLILCSPSNPTGSVYSKKLLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHISFASLPGM WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMVKAFMERRDFLIRSFGEMEGVRMSEPQGAF YLFIDTSSYYGTEAEGFGKIEDSDSLCRYLLDQAQVALVPGVAFGDDSCIRISYAASLTTLQEAVGRIKKALLPLKSAVPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.007G088426 [exp]	0	1
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.010G117900 [exp]	3.87	0.7644
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021000 [exp]	5.09	0.8285
AT4G02370			Protein of unknown function, D...		Potri.014G127500 [exp]	10.24	0.8105
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	12.24	0.7976
					Potri.001G388450 [exp]	22.58	0.7721
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014382 [exp]	24.45	0.7465
AT2G47115			unknown protein		Potri.014G115200 [exp]	27.16	0.7771
AT4G22592		CPuORF27	conserved peptide upstream ope...		Potri.001G120550 [exp]	28.77	0.7257
					Potri.001G062100 [exp]	28.91	0.7708
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.019G015768 [exp]	30.00	0.7867

Compare expression of checked genes

Potri.007G088426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.