Plant FIBer expression Database

Potri.007G088500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39810 310 / 1e-107 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
AT5G07710 275 / 6e-91 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
AT1G74390 267 / 3e-87 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
AT5G61390 258 / 4e-84 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G079100
[exp]
414 / 2e-148 AT4G39810 344 / 3e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Potri.015G062000
[exp]
279 / 5e-92 AT5G61390 543 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022503
[exp]
322 / 1e-111 AT4G39810 305 / 2e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10016807
[exp]
318 / 5e-110 AT4G39810 297 / 2e-101 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10019078
[exp]
286 / 9e-95 AT5G61390 528 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10015719
[exp]
285 / 3e-94 AT5G61390 541 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10000567
[exp]
276 / 9e-91 AT5G61390 480 / 8e-167 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0219 RNase_H PF00929 RNase_T Exonuclease
Representative CDS sequence
>Potri.007G088500.1 pacid=42765542 polypeptide=Potri.007G088500.1.p locus=Potri.007G088500 ID=Potri.007G088500.1.v4.1 annot-version=v4.1
ATGGAGTCGTCTAGTCCTTATCCCGTAGGCTCACCAGAGATTGTGGTCTTCGACTTGGAAACAACGGTGCCCAATAGAGCCGGACAACGGTTCCGGGTAC
TGGAGTTTGGTGCAATAACAGTTTGTCCACGGAAACTTGTTGAGCTAGATAGCTATAGTACCCTCATAAGACCTAAGGACTTGTCTGCTGTTGCATTGAA
GTCTGGTCGATGTGATGGAATAACTCGTGGAGCTGTTTCAAATGCACCTGCATTCGAGGAAGTTGCTGATAAAATTTTTAGTATTTTGAATGGTAGAATT
TGGGCAGGACATAACATCCAAAGATTTGACTGTGTCCGGATTAAGGAGGCATTTGCAGAGATTGGTAAGCCGGCGCCAGTTCCTGCTGGAATGATTGATT
CTTTAGGAGTCCTGACTGAAAGATTCGGCAGAAGAGCCGGTAACATGAAGATGGCAACTTTAGCTGCTTATTTTGGACTCGGCAAGCAAAAACACAGGAG
TCTCGATGACGTTCGTATGAACTTAGAGGTCTTGAAGCATTGCGCTACGGTTTTATTCCTGGAATCATGCCTTCCAAGCGTTTCGAATGCCAAATGGTGC
AACCCTTCAACAATAGTAACTCGAAGCAGAAGTAATGGAAAACTGCCGTGTAGGGAAGAAAATAGCCGAAAATCACCTCCAACTACTCTTGGATAG
AA sequence
>Potri.007G088500.1 pacid=42765542 polypeptide=Potri.007G088500.1.p locus=Potri.007G088500 ID=Potri.007G088500.1.v4.1 annot-version=v4.1
MESSSPYPVGSPEIVVFDLETTVPNRAGQRFRVLEFGAITVCPRKLVELDSYSTLIRPKDLSAVALKSGRCDGITRGAVSNAPAFEEVADKIFSILNGRI
WAGHNIQRFDCVRIKEAFAEIGKPAPVPAGMIDSLGVLTERFGRRAGNMKMATLAAYFGLGKQKHRSLDDVRMNLEVLKHCATVLFLESCLPSVSNAKWC
NPSTIVTRSRSNGKLPCREENSRKSPPTTLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39810 Polynucleotidyl transferase, r... Potri.007G088500
[exp]
0 1
AT5G37180 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE S... Potri.017G139100
[exp]
2.00 0.9788
AT1G65910 NAC ANAC028 NAC domain containing protein ... Potri.017G139500
[exp]
4.47 0.9594
AT3G10680 HSP20-like chaperones superfam... Potri.008G014000
[exp]
4.89 0.9626
AT2G27140 HSP20-like chaperones superfam... Potri.004G191101
[exp]
5.09 0.9682
AT2G27140 HSP20-like chaperones superfam... Potri.004G191200
[exp]
6.00 0.9674
AT1G65810 P-loop containing nucleoside t... Potri.004G077600
[exp]
9.16 0.9517
AT1G68180 RING/U-box superfamily protein... Potri.015G127600
[exp]
10.58 0.9221
AT2G19480 NFA2, NFA02, NA... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.003G036200
[exp]
11.22 0.9338
AT4G33490 Eukaryotic aspartyl protease f... Potri.007G099200
[exp]
11.61 0.9476
AT3G07420 ATNS2, SYNC2_AR... SYNTHETASE C2, asparaginyl-tRN... Potri.002G249700
[exp]
11.66 0.9349 Pt-SYNC2.1

Potri.007G088500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.