Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 91 / 3e-23 J20 DNAJ-like 20 (.1.2) AT3G13310 62 / 2e-12 Chaperone DnaJ-domain superfamily protein (.1) AT1G59725 60 / 5e-11 DNAJ heat shock family protein (.1) AT1G10350 60 / 5e-11 DNAJ heat shock family protein (.1) AT3G47940 59 / 1e-10 DNAJ heat shock family protein (.1) AT1G59980 59 / 1e-10 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G01390 57 / 5e-10 DNAJ heat shock family protein (.1.2.3.4) AT1G80030 57 / 6e-10 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G22360 57 / 8e-10 DNAJ heat shock family protein (.1) AT3G08910 56 / 1e-09 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G078801 [exp] 271 / 1e-94 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2) Potri.017G058400 [exp] 80 / 7e-19 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 79 / 1e-18 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.007G107600 [exp] 72 / 3e-16 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 61 / 7e-12 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G113100 [exp] 60 / 8e-12 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 59 / 2e-11 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G131800 [exp] 58 / 2e-11 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G246700 [exp] 61 / 3e-11 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019668 [exp] 139 / 1e-42 AT4G13830 82 / 6e-20 DNAJ-like 20 (.1.2) Lus10000690 [exp] 130 / 4e-39 AT4G13830 72 / 2e-16 DNAJ-like 20 (.1.2) Lus10019669 [exp] 129 / 1e-38 AT4G13830 76 / 9e-18 DNAJ-like 20 (.1.2) Lus10000689 [exp] 125 / 4e-37 AT4G13830 83 / 2e-20 DNAJ-like 20 (.1.2) Lus10002356 [exp] 84 / 2e-20 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10002355 [exp] 81 / 5e-19 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10016637 [exp] 80 / 8e-19 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2) Lus10003150 [exp] 79 / 3e-18 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10022550 [exp] 78 / 6e-18 AT4G13830 181 / 6e-58 DNAJ-like 20 (.1.2) Lus10003149 [exp] 76 / 3e-17 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.007G088900.1 pacid=42766669 polypeptide=Potri.007G088900.1.p locus=Potri.007G088900 ID=Potri.007G088900.1.v4.1 annot-version=v4.1 ATGGAGATGTCCCTGCAAGTAAGTCCTAGGACAGCAAATAAGTTGCCAATTATGATGAAGAAATGGTCAAGGCAAAAATCCTATAAGCACAGGACAATTT TATGCAAGACGGCGACTAACGAGGTAGCATTTCGAAAAAAGATGAACTTCTATGAAGTTCTTTCTCTTGGATCTCAGAATGTAGGGTTTGATGAGATAAA GAAAGCTTATAGAAGCATGGCTCTGCAATACCACCCGGATGTATGTCCTCCCTCAGCAAAAGAAGAGTCTACAAAGCGATTTGTTGAGCTTCAAAAGGCT TATGAGACATTGTCTGATCCAATTGCTCGTAGAATGTATGATCTCGAGTTGGGTATGGTTAATTCTGTAGGATTTGCGTTTGAAGGGCTTCCATCGGAGG ATAGGAAGAACAGTTTTCCAAGGGAAGTGTGGGAAAGGCAACTGCATGGATTATATCAGCGATCATATGCCCGAGTGGAGAGGTGGAACAATGGATATAC TCATGTGAAAGTTATTTAA
AA sequence Show only first row Show all	>Potri.007G088900.1 pacid=42766669 polypeptide=Potri.007G088900.1.p locus=Potri.007G088900 ID=Potri.007G088900.1.v4.1 annot-version=v4.1 MEMSLQVSPRTANKLPIMMKKWSRQKSYKHRTILCKTATNEVAFRKKMNFYEVLSLGSQNVGFDEIKKAYRSMALQYHPDVCPPSAKEESTKRFVELQKA YETLSDPIARRMYDLELGMVNSVGFAFEGLPSEDRKNSFPREVWERQLHGLYQRSYARVERWNNGYTHVKVI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.007G088900 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283866 [exp]	1.41	0.9637
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283208 [exp]	2.00	0.9629
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G180500 [exp]	3.46	0.9361
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037300 [exp]	3.87	0.9539
					Potri.015G025600 [exp]	4.24	0.9239
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	8.77	0.9348	HSP70.7
AT3G03280			unknown protein		Potri.017G121200 [exp]	9.21	0.9025
AT5G57123			unknown protein		Potri.006G073400 [exp]	10.95	0.8977
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	11.31	0.9342
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Potri.015G093800 [exp]	12.72	0.8892

Compare expression of checked genes

Potri.007G088900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.