Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MIPS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22240 975 / 0 ATIPS2, ATMIPS2 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, INOSITOL 3-PHOSPHATE SYNTHASE 2, myo-inositol-1-phosphate synthase 2 (.1.2) AT5G10170 967 / 0 ATMIPS3 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, myo-inositol-1-phosphate synthase 3 (.1) AT4G39800 962 / 0 ATIPS1, ATMIPS1, MI-1-P SYNTHASE, MI-1-PSYNTHASE D-myo-Inositol 3-Phosphate Synthase 1, INOSITOL 3-PHOSPHATE SYNTHASE 1, myo-inositol-1-phosphate synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G078700 [exp] 1026 / 0 AT5G10170 976 / 0.0 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, myo-inositol-1-phosphate synthase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000692 [exp] 989 / 0 AT2G22240 976 / 0.0 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, INOSITOL 3-PHOSPHATE SYNTHASE 2, myo-inositol-1-phosphate synthase 2 (.1.2) Lus10019671 [exp] 791 / 0 AT2G22240 780 / 0.0 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, INOSITOL 3-PHOSPHATE SYNTHASE 2, myo-inositol-1-phosphate synthase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0139 [poplar] [flax] GADPH_aa-bio_dh PF01658 [poplar] [flax] Inos-1-P_synth Myo-inositol-1-phosphate synthase CL0063 [poplar] [flax] NADP_Rossmann PF07994 [poplar] [flax] NAD_binding_5 Myo-inositol-1-phosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.007G089000.2 pacid=42765445 polypeptide=Potri.007G089000.2.p locus=Potri.007G089000 ID=Potri.007G089000.2.v4.1 annot-version=v4.1 ATGTTTATTGAGAAGTTTAAGGTTGAGAGTCCTAACGTTAAGTACATAGAGGATGAGATTCATTCCGTTTACAACTACGAAACCACTGAACTTGTTCATG AGAACAGAAATGGTTCTTATCAATGGACTGTCAAGCCCAAAACTGTCCAATATGAATTCAAGACTGACATTCGTGTCCCCAAACTAGGTGTTATGCTTGT GGGGTGGGGAGGAAACAATGGTTCAACTCTCACTGGAGGTGTTATTGCCAACAAAGAAGGAATCTCCTGGGCAACTAAGGACAAGGTGCAGCAAGCCAAT TACTTTGGATCACTTACCCAGGCATCAAGCATCAGACTTGGGTCTTTCAATGGAGAGGAGATTTATGCTCCATTCAAGAGCTTGCTCCCCATGGTGAACC CAGATGACATTGTATTTGGGGGATGGGACATAAGTGACATGAACTTAGCAGATGCCATGGCGAGGGCCAAGGTTTTCGATATTGACTTGCAAAAGCAATT GAGGCCCTACATGGAATCCATGGTACCCCTCCCTGGAATTTACGACCCTGATTTCATTGCTGCCAATCAAGGCTCACGTGCTAACAATGTCATCAAAGGC ACCAAGAAAGAACAAGTTCAGAAAATTATGGAAGACATCAGGGAATTTAAGGAGAAAAACAAGGTGGACAAGGTTGTTGTGTTGTGGACTGCCAACACAG AGAGGTACAGTAATATTGCTGTGGGGCTAAATGACACCATGGAGAACCTCCTGGCTGCTGTGGAGAAGGATGAATCAGAGATATCTCCATCAACCTTGTT TGCTCTGGCTTGTATTAATGAAAATATACCTTTCATCAATGGAAGCCCACAAAACACTTTTGTTCCAGGACTTATTGATCTGGCTATTAAGAGGAACAGT TTGATTGGTGGAGATGACTTTAAGAGTGGTCAGACCAAGATGAAATCTGTGCTGGTTGATTTCCTTGTTGGGGCCGGTATTAAGCCAACATCAATAGTGA GTTACAACCATCTGGGAAACAATGATGGCATGAACCTCTCAGCACCTCAAACCTTCCGCTCCAAAGAAATCTCCAAGAGCAATGTTGTTGATGACATGGT CTCTAGCAATGGAATTCTGTATGAGCCCGGTGAACACCCTGACCATGTTGTAGTCATCAAGTATGTGCCATATGTTGGAGATAGCAAGAGAGCTATGGAT GAGTACACCTCAGAGATATTCATGGGTGGCCAAAACACCATTGTGATGCACAACACCTGTGAAGACTCCCTCTTGGCTGCACCAATCATCCTGGATTTGG TTCTTCTTGCAGAGCTTAGCACCAGGATCCAGTTCAAAGGTGAAGCAGAGGGCAAGTTCCACTCTTTCCACCCTGTTGCTACTATTCTCAGTTACCTTAC GAAGGCTCCTCTTGTTCCACCAGGCACACCAGTGGTGAATGCTCTGTCAAAGCAGCGTGCAATGCTTGAGAACATACTGAGAGCTTGTGTTGGGTTAGCT CCTGAGAACAACATGATTTTGGAATACAAGTGA
AA sequence Show only first row Show all	>Potri.007G089000.2 pacid=42765445 polypeptide=Potri.007G089000.2.p locus=Potri.007G089000 ID=Potri.007G089000.2.v4.1 annot-version=v4.1 MFIEKFKVESPNVKYIEDEIHSVYNYETTELVHENRNGSYQWTVKPKTVQYEFKTDIRVPKLGVMLVGWGGNNGSTLTGGVIANKEGISWATKDKVQQAN YFGSLTQASSIRLGSFNGEEIYAPFKSLLPMVNPDDIVFGGWDISDMNLADAMARAKVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGSRANNVIKG TKKEQVQKIMEDIREFKEKNKVDKVVVLWTANTERYSNIAVGLNDTMENLLAAVEKDESEISPSTLFALACINENIPFINGSPQNTFVPGLIDLAIKRNS LIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVSSNGILYEPGEHPDHVVVIKYVPYVGDSKRAMD EYTSEIFMGGQNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQFKGEAEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLA PENNMILEYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.007G089000 [exp]	0	1	Pt-MIPS.2
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	2.64	0.9334	ANR/BAN2,Pt-BAN.1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G023900 [exp]	3.16	0.9218	CHI3.7
AT2G17500			Auxin efflux carrier family pr...		Potri.005G099300 [exp]	3.16	0.9127
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G083300 [exp]	6.63	0.8836
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.011G158500 [exp]	8.66	0.8916
AT5G24090		ATCHIA	chitinase A (.1)		Potri.012G033899 [exp]	13.85	0.9117
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095400 [exp]	19.28	0.8604
AT2G34930			disease resistance family prot...		Potri.010G107000 [exp]	20.59	0.8485
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095100 [exp]	23.06	0.8800
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.008G128500 [exp]	27.05	0.8605	MYB194

Compare expression of checked genes

Potri.007G089000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.