Plant FIBer expression Database

Potri.007G089400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G078500
[exp]
828 / 0 ND /
Potri.005G167800
[exp]
634 / 0 ND /
Potri.007G010000
[exp]
458 / 4e-157 ND /
Potri.002G093000
[exp]
272 / 3e-88 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041110
[exp]
598 / 0 ND /
Lus10036436
[exp]
561 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00150 Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence
>Potri.007G089400.1 pacid=42765273 polypeptide=Potri.007G089400.1.p locus=Potri.007G089400 ID=Potri.007G089400.1.v4.1 annot-version=v4.1
ATGTCTACTTCTATATATATTTCTCTTCTATGTATTACAACCTTAAATCCTTTCATTCTCATAAAAAGAGAGCGAATAATGGCTTACTATTTCTTTATCT
TGGCTACTCTTTTTTTCGTGTTCTCCCCTCTTTCTCTTGCACAGCCATTTAAAGCTGTGAATTTAGGAAACTGGCTTGTTACTGAAGGGTGGATGAAACC
TTCTCTCTATGATGGGATGCCGAACAATGATCTCCTGGATGGAGCTCAAGTGCAGTTCTTGTCCACAAAGCTGCAGAAGTATCTTAGCTCTGAAAATGGA
GGCGGGACCGTCCTAGTAGCCAACCGGCCCTCAGCCTCTGGCTGGGAAACGTTCAGATTGTGGAGGATCAATGAGACATATTTCAACTTTAGAGTGTTCA
ACAAGCAGTTTGTGGGGCTGGAGGATCAAGGAGACAAAGTAACAGCAGTTTCAGATACTGTTGGAAACTCACAAACATTCCAGATTATAAGAAATAACGA
TGACCGGAATCGAGTTCGCCTCCAAGCATCAAATGGACAGTTCATTCAGGCATCATCAGAGACATTGGTAACTGCAGATTATGTCGGCTCAGGTTGGGAG
GACAGCGATCCATCAGTATTCAAAATGACCATTGTCAATATATATTCCTTCCGAGGTGAATATCAACTCACAAATGGTTATGGCCCAGACAGAGCTCCTC
AGGTCTTGCAGGATCATTGGAACTCTTACATCACTGAAGAGGACTTCCGCTTCATGTCAGAAAATAGTCTTAATGCTGTCAGAATTCCAGTTGGATGGTG
GATCGCCAGTGATCCCACACCACCGAAACCTTTTGTCGGTGGCTCTTTGAAAGCCTTAGACAATGCTTTCACATGGGCACAGAAATACGGCATGAAGGTC
ATCGTTGATTTGCATGCAGTTCAAGCTTCACAAAATGGCAATGATCATAGCGCGACACGAGATGGGTATCAGGAATGGGGAGAATCAAACATTCAGGAAA
CGGTGGCTGTCATAGACTTCCTTGCAGAAAGGTATGCCGACAAACCAAGTCTTGCCGCAATTGAATTGATGAATGAACCGATGGCCCCGGGAGTCAATCT
AGACACCCTAATAAAGTATTATCAAGCTGGATATGATGCCGTAAGGAAGCACTCTGAAAATGCTTATGTGATCCTCTCAAATCGACTAGGGCCTGCTGAT
TCCAAAGAGCTCCTCTCATTTGCAAGCGGTCTCAAACGTGTAGTCATTGATGTGCATTATTACAACCTATTTTCAGATTCATTCAATAACATGAATCCCC
AACAGAACATTGACTATATCTATAATCAGCGAGCTAGTGCTCTAACAACAGTGACAACTACAAATGGCCCCCTCAGTTTTGTAGGGGAATGGACTGGAGA
TTGGGCAGTTCAGGGAGCATCGATGCAAGATTACCAGAACTTTGCCAAGGCTCAACTGGATGTCTATGGGCGTGCCACATTTGGATGGGCATATTGGGCT
TATAAGTGTGCAGGTGACCACTGGAGTCTCAAATGGATGATTGAGAACAACTATATAAAGCTCTAG
AA sequence
>Potri.007G089400.1 pacid=42765273 polypeptide=Potri.007G089400.1.p locus=Potri.007G089400 ID=Potri.007G089400.1.v4.1 annot-version=v4.1
MSTSIYISLLCITTLNPFILIKRERIMAYYFFILATLFFVFSPLSLAQPFKAVNLGNWLVTEGWMKPSLYDGMPNNDLLDGAQVQFLSTKLQKYLSSENG
GGTVLVANRPSASGWETFRLWRINETYFNFRVFNKQFVGLEDQGDKVTAVSDTVGNSQTFQIIRNNDDRNRVRLQASNGQFIQASSETLVTADYVGSGWE
DSDPSVFKMTIVNIYSFRGEYQLTNGYGPDRAPQVLQDHWNSYITEEDFRFMSENSLNAVRIPVGWWIASDPTPPKPFVGGSLKALDNAFTWAQKYGMKV
IVDLHAVQASQNGNDHSATRDGYQEWGESNIQETVAVIDFLAERYADKPSLAAIELMNEPMAPGVNLDTLIKYYQAGYDAVRKHSENAYVILSNRLGPAD
SKELLSFASGLKRVVIDVHYYNLFSDSFNNMNPQQNIDYIYNQRASALTTVTTTNGPLSFVGEWTGDWAVQGASMQDYQNFAKAQLDVYGRATFGWAYWA
YKCAGDHWSLKWMIENNYIKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G089400
[exp]
0 1
AT1G58190 AtRLP9 receptor like protein 9 (.1.2) Potri.017G018700
[exp]
3.46 0.9137
AT1G20225 Thioredoxin superfamily protei... Potri.002G017500
[exp]
5.29 0.8904
AT2G15080 AtRLP19 receptor like protein 19 (.1.2... Potri.011G104600
[exp]
5.91 0.8995
AT5G36930 Disease resistance protein (TI... Potri.007G143300
[exp]
12.40 0.8828
AT3G53310 B3 REM20 AP2/B3-like transcriptional fa... Potri.004G219800
[exp]
13.49 0.8804
AT1G13080 CYP71B2 "cytochrome P450, family 71, s... Potri.015G086000
[exp]
15.58 0.8556
AT1G03670 ankyrin repeat family protein ... Potri.013G134500
[exp]
28.24 0.8484
AT5G38280 PR5K PR5-like receptor kinase (.1) Potri.017G009400
[exp]
29.17 0.8484
AT1G58190 AtRLP9 receptor like protein 9 (.1.2) Potri.005G008901
[exp]
33.80 0.8847
AT5G36930 Disease resistance protein (TI... Potri.011G008868
[exp]
41.42 0.8474

Potri.007G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.