Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15125 284 / 5e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 268 / 1e-87 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G37990 243 / 2e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38780 235 / 8e-75 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38100 234 / 9e-75 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G37970 233 / 2e-73 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44840 228 / 2e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44870 213 / 6e-66 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44860 211 / 6e-66 FAMT farnesoic acid carboxyl-O-methyltransferase (.1) AT4G26420 201 / 2e-61 GAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104800 [exp] 328 / 2e-111 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016112 [exp] 308 / 3e-103 AT1G68040 319 / 2e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016102 [exp] 305 / 6e-102 AT1G68040 315 / 6e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G049900 [exp] 295 / 2e-98 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136300 [exp] 290 / 3e-96 AT1G68040 379 / 7e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G041900 [exp] 288 / 6e-95 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122700 [exp] 284 / 6e-94 AT5G38780 322 / 2e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122000 [exp] 284 / 8e-94 AT5G37970 327 / 7e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122950 [exp] 283 / 1e-93 AT1G15125 321 / 4e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043177 [exp] 198 / 4e-60 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10021802 [exp] 186 / 1e-56 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041380 [exp] 176 / 9e-52 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 170 / 1e-49 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028500 [exp] 162 / 4e-47 AT5G37990 187 / 6e-57 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 165 / 7e-46 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041776 [exp] 160 / 1e-45 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 157 / 1e-44 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032569 [exp] 153 / 1e-43 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2) Lus10025993 [exp] 152 / 6e-42 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03492 [poplar] [flax] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G089500.1 pacid=42765684 polypeptide=Potri.007G089500.1.p locus=Potri.007G089500 ID=Potri.007G089500.1.v4.1 annot-version=v4.1 ATGGGAGAATCATTTCCTATGACCGGCGGAGATGGCCCTCACAGCTACACCAAGAATTCCAGTCTACAGAAAGCGGCAGCTGCTAGTGCAAAATCAATGC TGACTTCAGGGATCATCGAAAACCTTGTCGTAGAGCATTCTTCGAAGATGTTTGCTGTTGCTGATTTAGGTTGTTCGACTGGACCGAATACATTTATAGC TATGGACAATATAATAGAAGCCGTCACACAGAAGTGCGAAATCAAAGGCCACTGTAGCCTCCCAGAGTTTCAAGTGTATTTCAATGATCATGTTTCAAAT GATTTCAATATTCTCTTTGCGAATCTCCCTCCAGATAGGAAATATTTCGCATTTGGAGTTCCAGGTTCTTTTCATGGAGGATTATTTCCAAAGGCTAGCC TTAACATCATTTACTCAGCATTTGCACTGCATTGGCTATCTAGGGCACCACAAGAGCTGGGTGATGTGAATTCACCAGCATGTAACAAGGGCAGGATCTA TTATTCAAATGCACCTCATGAAGTTGGTCAGGCCTATTCACTTCAATATGCAAAGGACATGGAGTCCTTTCTAGCTGCTCGAGCAGAAGAGCTTGCTCCT GGTGGCTTGATGATAATTCTCATGCCAGGACGTCCGGATGGAACTCTGCCATCTCAAAATTCGCTTGGCCCCTTTATAAAGCCATTGGAATCATGCCTTA CAGACATGGTTGATGAGGAAATAATACGCAATCACGAAATCGACTCATTCAACATGCCCCTGTATAGCCCTTCAATGGAAGAGCTAAGAAAACTGATTGA GAAAAATGGTTGCTTTGGGATTGCAAGATTGGAAACACTGCCTCCGATGTCTGTTCCATTACCTTCAGTTGAAGAATGTAGATCCGGATTTGAAAGCATT TTAAGAAAACACTTCCGCAGTGAAATTATTGAACAGCTATTCGAGAGATATCCTGCCAAAATCGCTGGGAAACCGCCAATAAAGGCAAGTGATGGCTTTA CCATTGGATTGTTTGTAATTCTCAAGCGCAATATCTGA
AA sequence Show only first row Show all	>Potri.007G089500.1 pacid=42765684 polypeptide=Potri.007G089500.1.p locus=Potri.007G089500 ID=Potri.007G089500.1.v4.1 annot-version=v4.1 MGESFPMTGGDGPHSYTKNSSLQKAAAASAKSMLTSGIIENLVVEHSSKMFAVADLGCSTGPNTFIAMDNIIEAVTQKCEIKGHCSLPEFQVYFNDHVSN DFNILFANLPPDRKYFAFGVPGSFHGGLFPKASLNIIYSAFALHWLSRAPQELGDVNSPACNKGRIYYSNAPHEVGQAYSLQYAKDMESFLAARAEELAP GGLMIILMPGRPDGTLPSQNSLGPFIKPLESCLTDMVDEEIIRNHEIDSFNMPLYSPSMEELRKLIEKNGCFGIARLETLPPMSVPLPSVEECRSGFESI LRKHFRSEIIEQLFERYPAKIAGKPPIKASDGFTIGLFVILKRNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.007G089500 [exp]	0	1
AT2G31335			unknown protein		Potri.019G012400 [exp]	4.47	0.8459
AT5G01750			Protein of unknown function (D...		Potri.016G130400 [exp]	4.58	0.8290
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.001G319100 [exp]	7.93	0.6747	Pt-DNAJ.2
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G226200 [exp]	9.16	0.8286	Pt-PLIN-GEN.19
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G069001 [exp]	14.49	0.7732
					Potri.008G068601 [exp]	15.42	0.7527
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Potri.015G100102 [exp]	19.18	0.7820
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	23.81	0.7788	FAD2.3
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Potri.001G225812 [exp]	26.70	0.7365
					Potri.001G306932 [exp]	28.14	0.7524

Compare expression of checked genes

Potri.007G089500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.