Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65090 671 / 0 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 466 / 2e-160 DNAse I-like superfamily protein (.1.2) AT3G63240 414 / 4e-139 DNAse I-like superfamily protein (.1) AT1G05470 341 / 7e-110 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G32010 338 / 3e-109 CVL1 CVP2 like 1 (.1.2) AT2G37440 315 / 2e-102 DNAse I-like superfamily protein (.1.2) AT4G18010 318 / 7e-101 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT2G01900 266 / 2e-83 DNAse I-like superfamily protein (.1) AT1G34120 261 / 1e-79 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT1G71710 255 / 1e-76 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G078000 [exp] 962 / 0 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 503 / 2e-174 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 489 / 1e-169 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.002G050000 [exp] 442 / 6e-150 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 437 / 4e-148 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 347 / 1e-112 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G155700 [exp] 346 / 2e-112 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.015G032200 [exp] 284 / 1e-89 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 281 / 2e-88 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024041 [exp] 574 / 0 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041708 [exp] 516 / 2e-179 AT5G65090 469 / 2e-161 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 476 / 8e-164 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 466 / 5e-160 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 450 / 3e-154 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 365 / 2e-124 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 381 / 4e-120 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 344 / 5e-114 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 345 / 2e-111 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10014684 [exp] 327 / 2e-102 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.007G090200.1 pacid=42765341 polypeptide=Potri.007G090200.1.p locus=Potri.007G090200 ID=Potri.007G090200.1.v4.1 annot-version=v4.1 ATGAACAAAGCCAAAAGCCCTAGCAATGTCACCTCTGATGATTCTGTCAAGAATGAAAAGAAAAGGAAGTCTATTATTCCAAAGATTTTCAGTTCAAAAT GGAACAATAGAAATGCTTCCAATGATGATGATGTAGTTGGATCAGATGGCACTGGAATTTCTCTTGATGTGGACAAGAAGATTGCAGGAAGGAAGAAAAC ATTCATAGAGCCATCCCCCCTGATGAGAAAAAGTTACACAGAAAGACGGAATAGTACAGGGATTGAAGGCCTAAACTTATCAAACATTGATCACTCTATG GCACCAGAAACAGAAATTAAAGAATTTAGGATATCTGTTGCAACATGGAATGTGGGAGGCAAGGCACCCAACCCTGACCTCAACCTTGAAGATTTCTTGC AGGTTGAGGGATCTGCGGATATTTATGTCTGTGGGTTTCAGGAAATTGTTCCACTCAATGCTGGAAATGTATTGGTGATTGAAGATAATGAACCTGCAGC AAGATGGCTAGCCCTGATAAGCCAAGCACTTAACAAACCACTGCATGATTCTACAAACTATTCTTCTGACTCAAGTCATGGTTCAAGAGGTCTGAACAGC AACGATAATAAAGACTCGAAGTCACATAACTTATTTTACAAGCCTTCACTGAAAGTCCTTGAAAATTACAGAGCAGATAGTAGCCTTCTCAAGATCTGCA ATTGTCAGGAGGAGTCCCAAACACGAGACAGACAGAGAGAAAGAAAGCTTAGTGACCCCATCCACAAACTAGACTCAGCAAAGGAAACACATCGCTTTCG TCCGTACAGCTCTGCCGATAGCATCCTCTATATGCCTGATATTCCTTCCTTCCCTTCCTCACTGACCGACAGGACCTATAACCTTATTGCAAGAAAGCAA ATGGTTGGAATTTTTCTCTCGGTGTGGGTTAGAAAGGAATTGGTTCCTCACATTGGTCATCTCAGGGTAGATTCTGTTGGTAGAGGAATAATGGGTCTTC TAGGCAACAAGGGATGTATATCAATAAGCATGTCATTGCACCAAACGAGCTTTTGTTTCGTGTGCAGTCACTTGGCTTCTGGTGAGAAGGAAGGTGACGA GCTAAAGAGGAATGCCGACGTAGCTGAGATCCTCAAAAGCACACAATTCCCCAAGATTTGCAAACATAGGCCTTGCCGAGCCACAGAAAGAATAGTTGAT CATGACCGTATAATTTGGCTAGGAGATTTAAATTACAGAGTAGCTTTGAGTTATGAGGAAACAAAGGTTCTGTTGGAGGATAAAGACTGGGACACCCTGC TGGAGAAGGATCAGTTGAATATGGAAAGAGAAGCAGGGAGAGTCTTTGAAGGGTTCAAAGAAGGAAGGATCTCGTTTGCTCCTACTTACAAGTACACACA AAATTCAGATTCTTATGCTGGAGAAAATGTTAAATCCAAGAAGAAACGTCGAACACCAGCATGGTGTGACAGGATATTATGGCGCGGTGATGGCATTGAA CAATTGTCCTATATTCGAGGAGAATCAAGATTTTCGGATCACAGACCAGTTTGTGCTGTGTTTGCAGCAGAGGTGGAAATGAGGAACAGAACCAACAGCA GGTTCAGGAAAGGTTACTCATGTGCTGCTGCAAAACTGGAATTTGATAACTGCATACCCCGAAGGCACAGCTTATATGAGTTCTAA
AA sequence Show only first row Show all	>Potri.007G090200.1 pacid=42765341 polypeptide=Potri.007G090200.1.p locus=Potri.007G090200 ID=Potri.007G090200.1.v4.1 annot-version=v4.1 MNKAKSPSNVTSDDSVKNEKKRKSIIPKIFSSKWNNRNASNDDDVVGSDGTGISLDVDKKIAGRKKTFIEPSPLMRKSYTERRNSTGIEGLNLSNIDHSM APETEIKEFRISVATWNVGGKAPNPDLNLEDFLQVEGSADIYVCGFQEIVPLNAGNVLVIEDNEPAARWLALISQALNKPLHDSTNYSSDSSHGSRGLNS NDNKDSKSHNLFYKPSLKVLENYRADSSLLKICNCQEESQTRDRQRERKLSDPIHKLDSAKETHRFRPYSSADSILYMPDIPSFPSSLTDRTYNLIARKQ MVGIFLSVWVRKELVPHIGHLRVDSVGRGIMGLLGNKGCISISMSLHQTSFCFVCSHLASGEKEGDELKRNADVAEILKSTQFPKICKHRPCRATERIVD HDRIIWLGDLNYRVALSYEETKVLLEDKDWDTLLEKDQLNMEREAGRVFEGFKEGRISFAPTYKYTQNSDSYAGENVKSKKKRRTPAWCDRILWRGDGIE QLSYIRGESRFSDHRPVCAVFAAEVEMRNRTNSRFRKGYSCAAAKLEFDNCIPRRHSLYEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Potri.007G090200 [exp]	0	1
					Potri.008G068601 [exp]	8.12	0.7317
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Potri.006G118100 [exp]	11.61	0.7139
AT2G31335			unknown protein		Potri.019G012603 [exp]	14.49	0.6504
AT5G53820			Late embryogenesis abundant pr...		Potri.004G106350 [exp]	15.49	0.6406
AT2G34930			disease resistance family prot...		Potri.015G025800 [exp]	20.85	0.5941
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.009G056000 [exp]	31.30	0.6356
					Potri.001G165360 [exp]	34.20	0.6017
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	36.74	0.5928
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.007G089500 [exp]	39.11	0.6320
AT2G14760	bHLH	bHLH084	basic helix-loop-helix (bHLH) ...		Potri.009G089000 [exp]	50.82	0.5825

Compare expression of checked genes

Potri.007G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.