Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39790 555 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 282 / 5e-84 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 160 / 1e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 154 / 1e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 153 / 2e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 153 / 3e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 137 / 4e-33 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 126 / 8e-30 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 123 / 1e-28 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G20530 113 / 8e-26 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077700 [exp] 1173 / 0 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G159000 [exp] 271 / 2e-79 AT2G27090 746 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G197700 [exp] 264 / 5e-77 AT2G27090 804 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 172 / 1e-44 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 172 / 1e-44 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 171 / 1e-44 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.006G077000 [exp] 167 / 5e-43 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 147 / 2e-36 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 146 / 4e-36 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041710 [exp] 749 / 0 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 737 / 0 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025550 [exp] 303 / 2e-91 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 259 / 8e-76 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 174 / 8e-46 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 159 / 3e-40 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 159 / 4e-40 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10020009 [exp] 148 / 1e-38 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 148 / 3e-37 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 146 / 5e-36 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.007G090300.1 pacid=42766284 polypeptide=Potri.007G090300.1.p locus=Potri.007G090300 ID=Potri.007G090300.1.v4.1 annot-version=v4.1 ATGGGTTCTGCAGGCTCCAAAGTAGACAAAACTGAACCTTTGGCTCTGTGCAAGGAACGGAGGAAGTTCATAAAGCAAGCGATTGATTCAAGGTACAATC TTGCAGCAGCTCATGTTTCTTACATAAACTCTCTTAAAAACTTTGGTGTAGCTCTCCGACGATTCGCTGAAGCAGAGGTTTTGATAGAGTCTTCTCTGTC AACAACCTCAGCTACTGAGCTTGACAAGTCTCCATCACATTCCTCGTACCTCTCTCCCTCTCCCTCTCACAATGCAGAGGTCTCAGATTCACCATTGCAC TTTGAGAGTCCTATTTCACCACCAGTGATGAACATGAGTTATATGAGAGCTGGTGGAGGTGGTAATGCAGTGACTGTTAAGTTTAATTTGAATAATAGTG GTGGTTTTGTAGAGGATGAGACATTGGGGTTCTCTATGCCAATGCCGCCGCCGCCACCTCCTCCTTTTGAGTTAGCTGGTTCATGGGATTTTTTTGATCC AAGTGATAATGGTGAGAGTTTTAGATTTGTTAGGCATAGTGAGTTGGATATGGATTTTGATAATATGAGTGGGTGGAGTGAGTTTAGGGGTGAAAAGGTT GGTATTGAACAAAGTGTGGTAGATGCAAAAGGAAAATGGACAAAAGTTGGTTTAGATGGAAAGAGTCAAGTACATGAAGAAACTCTGACGCCTGGTGTGG AGCATAAGGGGGTTGAAAGTTCTGGTAATTCATTAACTCAAAATGGCAGTTATAACTCTAGAGTGAAAGGCACTGCCCCCTCGTTTGAATTGAGAGGAGT TGAAGGTTCTAGTAGACAAGAATTTGTTGGTCAAGTGAGGCATGTAGAAGAGGGGCAAAATGCCAGTGTTTCCACTCTTGAACAATCAGGTTCAAGGAGA GAGAAAGCAGTAGCAGTGAACAATTTGTCTACAGAAAGAGAGGATCCATCGGAGTTCATTACGCATAGAGCTAAGGATTTTCTTGCAAGCGTAAAGGATA TAGAGCATCGCTTCTTTAGAGCATCTGAATCTGGGAAGGAGGTCTCCAGAATGCTTGAGGCAAACAATATCAGGGTTGGATATTCTGAGGCAAAAGGAGG ATCTGCCTCAGCAATTTTGGTGGCTGTAAAATTTGTTTGCTGTCGAGGAAAGACTGCACTTGTTTCTCATGAACCTGTAGAACATATGACTAAGATCATT ACATGGAAACGGACAACATCTTCAAGGTCATCTTCATCAAGAAATCCTCTTGTCACGGCAACAAAAGATGATGCCTCAGATAGTGGTAGTGATTTTGTTG AAGAGTTCTGCATGATTGCAGGGAGTCATTCCTCCACCCTTGACAGACTGTATGCATGGGAAAGAAAACTCTATGATGAAATAAAGGCCAGTGAATCTAT CAGGAGAGAGTATGATCGGAGGTGTGACCAGCTTAGACACCAGTTTGCCAAAGATCAAAGCGCTAATGTGATTGATAAAACCCGTGCAGTTGTAAAGGAT TTACATTCACGCATAAGAGTGGCAATTCACTCTGTAGATTCAATATCAAAGCGGATTGAGAAAATGAGAGATGAAGAGTTGCAGCCGCAACTTCTAGAAT TAATTCAAGGGTTGATCAGGATGTGGAAGACCATGCTTGAATGCCATCATGCACAGTACATCACAATCTCATTAGCATACCATTCAAGGAGTATAACAGG AACTCCACAAGGAAATACCCGTAGGCAGATTATGGCTCAGCTCCAGCAGGAGGTTGAATGCTTTGGCTTAAGCTTTGCAAACTGGGTTAACAGCCATGCA TCCTATGTGGAAGCTCTAAATGGGTGGCTGCAAAATTGCATCCTGCAACCACAGGAGCGTTCCAAGAGTAGGAGGTCATTCTCCCCTCGCCGACTCTTGG CACCACCTTTATTTGTTCTATGTCGTGATTGGTCAGCTGGGATCAGAGGTTTGCCATCTGAGGAACTCAATAATGCCATCAAAACCCTCTTATCTGATTT GTATCACCTAATGGAACAACAAGAAGAGCAGTTACACAAGGAAGAGAAAGTAGTTGATGTAAATAATGGAGAATCAGGGGAGAAAGAGAATGACAGGAAT GATGATCTGGCCTCGAACATGTACTGCATACACGCCAGTTTGACAAAGGTTCTTGATAGACTGAACAAATTTTCAGAGGCTTCATTGAAAATGTACGAGG ACGTCAGACAGAAAACTGAAGCAGCTCGAGTAGCGTACTTGAATTGCAGGCCACTTAGGTGTTAA
AA sequence Show only first row Show all	>Potri.007G090300.1 pacid=42766284 polypeptide=Potri.007G090300.1.p locus=Potri.007G090300 ID=Potri.007G090300.1.v4.1 annot-version=v4.1 MGSAGSKVDKTEPLALCKERRKFIKQAIDSRYNLAAAHVSYINSLKNFGVALRRFAEAEVLIESSLSTTSATELDKSPSHSSYLSPSPSHNAEVSDSPLH FESPISPPVMNMSYMRAGGGGNAVTVKFNLNNSGGFVEDETLGFSMPMPPPPPPPFELAGSWDFFDPSDNGESFRFVRHSELDMDFDNMSGWSEFRGEKV GIEQSVVDAKGKWTKVGLDGKSQVHEETLTPGVEHKGVESSGNSLTQNGSYNSRVKGTAPSFELRGVEGSSRQEFVGQVRHVEEGQNASVSTLEQSGSRR EKAVAVNNLSTEREDPSEFITHRAKDFLASVKDIEHRFFRASESGKEVSRMLEANNIRVGYSEAKGGSASAILVAVKFVCCRGKTALVSHEPVEHMTKII TWKRTTSSRSSSSRNPLVTATKDDASDSGSDFVEEFCMIAGSHSSTLDRLYAWERKLYDEIKASESIRREYDRRCDQLRHQFAKDQSANVIDKTRAVVKD LHSRIRVAIHSVDSISKRIEKMRDEELQPQLLELIQGLIRMWKTMLECHHAQYITISLAYHSRSITGTPQGNTRRQIMAQLQQEVECFGLSFANWVNSHA SYVEALNGWLQNCILQPQERSKSRRSFSPRRLLAPPLFVLCRDWSAGIRGLPSEELNNAIKTLLSDLYHLMEQQEEQLHKEEKVVDVNNGESGEKENDRN DDLASNMYCIHASLTKVLDRLNKFSEASLKMYEDVRQKTEAARVAYLNCRPLRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39790			Protein of unknown function (D...		Potri.007G090300 [exp]	0	1
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.019G033000 [exp]	6.00	0.8258
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.014G012200 [exp]	8.12	0.8464
AT4G25835			P-loop containing nucleoside t...		Potri.001G231200 [exp]	10.39	0.8463
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	12.84	0.8059
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	14.14	0.7809
AT1G45688			unknown protein		Potri.001G183600 [exp]	15.68	0.7622
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	15.96	0.7972
AT5G18260			RING/U-box superfamily protein...		Potri.019G032300 [exp]	17.23	0.7745
AT4G13990			Exostosin family protein (.1)		Potri.001G321000 [exp]	17.43	0.7812
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.005G130700 [exp]	21.09	0.7295

Compare expression of checked genes

Potri.007G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.