Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65120 176 / 3e-52 unknown protein AT5G10110 150 / 2e-42 unknown protein AT5G05240 44 / 0.0001 Uncharacterised conserved protein (UCP030365) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077400 [exp] 548 / 0 AT5G10110 150 / 2e-42 unknown protein Potri.019G058200 [exp] 47 / 1e-05 AT5G05240 301 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022498 [exp] 272 / 4e-89 AT5G10110 164 / 7e-48 unknown protein Lus10016802 [exp] 265 / 1e-86 AT5G65120 160 / 2e-46 unknown protein Lus10000581 [exp] 103 / 3e-27 AT5G65120 88 / 3e-22 unknown protein Lus10034236 [exp] 55 / 6e-08 AT5G05240 312 / 9e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10029030 [exp] 53 / 2e-07 AT5G05240 313 / 4e-100 Uncharacterised conserved protein (UCP030365) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G090500.1 pacid=42765798 polypeptide=Potri.007G090500.1.p locus=Potri.007G090500 ID=Potri.007G090500.1.v4.1 annot-version=v4.1 ATGAGTGGAGATAATTTCACCTCCAAACCGCGTGCCGCTTTGGGAGATGTGACTAATTTGCCAGAAAAAAGGGGGTTTTCATCGATTTCTGATGATTTGG GGCTTAAATCTAGAGGTGGGTATAGTGAAAATGGGGATTCAGTTTTTGCAAAACAAGTTTGTTTAGGAGTTGAAAATCTGGTGAAAAAGAAATGCGAAAC CAAAACTGGAGATGCCAGTGGCAATGAGAAAGTTTGCGATTCATTGACTACAAGTAGCAAGACTCGTGCCTCAAAGGACAATGTAGCTGTTGTGTCTGTT GTCGCAGATAGGCCTAGTGATATTAAGGAAACATCTAATTTGATTGATGGTAGTGTTGATTTAGTTAAGAGCAGCGGTACGGGAACACAAAGTGTTGGGG AAGTTAGTTGTGCATCTAGTGGTTCAATGTATACAAGCTCTGGGCTGTGCGTGAAAGATAGTGATGATGAAGGGAAAGTCACTTCCAATGTTATGCTGAT CAATCCAGTAGTTCAAGGGTTAGTTGGTGGTGCTTCTACAAGTGATGACATTGTTTCTGGAGTTGGTAGATTAGCTAGTGACAAATGTGGTTCTGTTGAG TGGTCGAGGTTGCCCAATTCACAGGGTTTGAAATCATTTGAGTTGGAAAAGTGCACAACACTCAAGGGTGATGTTTGTGCCAATCTAAATGCAGGTGCTG ACATGCTCAAAGCTTGCTCTTGTTCTTTTTGCTTGAAAGCTGCTTATATTTGGTCGGACCTATATTACCAGGACATCAAAGGTCGACAATCTGCATTGAA GAAGAGTCAGAAGGAAGCGGGAATCTTGGTTAATAAATATTCCAGGGGAAAGCAGACAGACATTCATAGCCAAGTAAACTCCAACAAATCCTTGAACTTA GAATCTGACCTCACTGATCACTGGAGGTCTCTTTTTCGACACATGGAAGACATGTTTGCCAATGAAAGCAGCCAGCTTCAAACTGGATATGTGACACTAA AAGATTTGAGGGACAACTGCAAGATTGATCTGGAGAGGATCACTGGAATGCCTTCAGACACACTTTAG
AA sequence Show only first row Show all	>Potri.007G090500.1 pacid=42765798 polypeptide=Potri.007G090500.1.p locus=Potri.007G090500 ID=Potri.007G090500.1.v4.1 annot-version=v4.1 MSGDNFTSKPRAALGDVTNLPEKRGFSSISDDLGLKSRGGYSENGDSVFAKQVCLGVENLVKKKCETKTGDASGNEKVCDSLTTSSKTRASKDNVAVVSV VADRPSDIKETSNLIDGSVDLVKSSGTGTQSVGEVSCASSGSMYTSSGLCVKDSDDEGKVTSNVMLINPVVQGLVGGASTSDDIVSGVGRLASDKCGSVE WSRLPNSQGLKSFELEKCTTLKGDVCANLNAGADMLKACSCSFCLKAAYIWSDLYYQDIKGRQSALKKSQKEAGILVNKYSRGKQTDIHSQVNSNKSLNL ESDLTDHWRSLFRHMEDMFANESSQLQTGYVTLKDLRDNCKIDLERITGMPSDTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65120			unknown protein		Potri.007G090500 [exp]	0	1
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	1.73	0.9654
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Potri.014G121000 [exp]	2.64	0.9430	PRL.2
AT5G06590			unknown protein		Potri.016G064200 [exp]	8.06	0.9413
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	8.12	0.9507
AT4G17240			unknown protein		Potri.006G017200 [exp]	9.48	0.9416
AT1G71760			unknown protein		Potri.002G062800 [exp]	9.89	0.9114
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Potri.009G089200 [exp]	9.94	0.9416
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	10.09	0.9496
AT3G27090			DCD (Development and Cell Deat...		Potri.019G066100 [exp]	12.64	0.9354
AT1G61000			unknown protein		Potri.007G116200 [exp]	12.96	0.9160

Compare expression of checked genes

Potri.007G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.