Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22170 217 / 7e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT4G39730 216 / 2e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT5G65158 142 / 1e-44 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT5G07190 40 / 0.0003 ATS3 seed gene 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077000 [exp] 284 / 2e-99 AT4G39730 218 / 3e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.005G076900 [exp] 259 / 1e-89 AT2G22170 214 / 6e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091100 [exp] 239 / 7e-82 AT4G39730 200 / 2e-66 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.003G107100 [exp] 174 / 5e-56 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.010G214400 [exp] 45 / 4e-06 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037491 [exp] 213 / 6e-71 AT2G22170 221 / 3e-74 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10006497 [exp] 210 / 6e-70 AT2G22170 219 / 1e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10009020 [exp] 174 / 6e-56 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [poplar] [flax] PLAT PF01477 [poplar] [flax] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Potri.007G091000.1 pacid=42765166 polypeptide=Potri.007G091000.1.p locus=Potri.007G091000 ID=Potri.007G091000.1.v4.1 annot-version=v4.1 ATGTCCCTAAACACTTTCCTCCTCTGTCTCCTCCTCCTCTTCTCCTTTTCCGTCATCGCCCTTTCTGATGAAGACTGTGTGTACACACTCTACATAAGAA CAGGGTCCATCATCAAAGGTGGCACGGACTCGATCATAAGCGTGAGGTTCTACGACAAGTATGGTGACTCCGTGGGGATCTCCAATATTGAAGCATGGGG AGGGTTGATGGAGCCTGGTCACGACTACTTCGAGAGGGGCGATTTGGACATTTTCAGTGGGAGAGCGCCGTGCTTGAGTTCACCGGTGTGTGCCCTGAAC TTGACCTCCGATGGGACAGGGTCAGGTCATGGGTGGTATGTTAACTACGTGGAGGTGACTAAAACAGGAGTCCATGCGACTTGTTCACAGATGAAATTTA CTATTGAGCAGTGGCTGGCTCTTGATACTTCACCTTATGAGTTAACTGCTATTAGGAATTATTGTGATTATCATGCGGATGATCGAGCTAAAACATCTGC TGGTTTAAGTTCTTCTTAG
AA sequence Show only first row Show all	>Potri.007G091000.1 pacid=42765166 polypeptide=Potri.007G091000.1.p locus=Potri.007G091000 ID=Potri.007G091000.1.v4.1 annot-version=v4.1 MSLNTFLLCLLLLFSFSVIALSDEDCVYTLYIRTGSIIKGGTDSIISVRFYDKYGDSVGISNIEAWGGLMEPGHDYFERGDLDIFSGRAPCLSSPVCALN LTSDGTGSGHGWYVNYVEVTKTGVHATCSQMKFTIEQWLALDTSPYELTAIRNYCDYHADDRAKTSAGLSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Potri.007G091000 [exp]	0	1
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.001G210100 [exp]	15.49	0.8387
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.011G003900 [exp]	19.05	0.8957
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G141800 [exp]	19.33	0.9150
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Potri.010G204400 [exp]	23.66	0.9000
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Potri.005G073300 [exp]	34.32	0.8867
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117100 [exp]	70.00	0.8964
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Potri.010G149400 [exp]	72.81	0.8386
AT1G60060			Serine/threonine-protein kinas...		Potri.014G024000 [exp]	76.13	0.8927
AT2G14900			Gibberellin-regulated family p...		Potri.001G297700 [exp]	77.76	0.8965
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Potri.012G144500 [exp]	81.06	0.8959

Compare expression of checked genes

Potri.007G091000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.