Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39730 201 / 2e-66 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT2G22170 199 / 5e-66 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT5G65158 142 / 2e-44 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT5G07190 44 / 1e-05 ATS3 seed gene 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076900 [exp] 283 / 5e-99 AT2G22170 214 / 6e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.005G077000 [exp] 249 / 9e-86 AT4G39730 218 / 3e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091000 [exp] 239 / 5e-82 AT2G22170 216 / 1e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.003G107100 [exp] 181 / 1e-58 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037491 [exp] 208 / 3e-69 AT2G22170 221 / 3e-74 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10006497 [exp] 208 / 3e-69 AT2G22170 219 / 1e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10009020 [exp] 174 / 1e-55 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [poplar] [flax] PLAT PF01477 [poplar] [flax] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Potri.007G091100.1 pacid=42765579 polypeptide=Potri.007G091100.1.p locus=Potri.007G091100 ID=Potri.007G091100.1.v4.1 annot-version=v4.1 ATGTCATTCCGCCCTCTCCTCCTCCCTCTCCTCCTCCTCCTTTCCTTCTCCTCTATAGTATTTTCTGATGAAGACTGCGTATACACAATGTACGTAAGAA CAGGATCCATTATCAAAGGAGGCACGGACTCCATCATAAGCGCGACACTGTACGACACTTATGGTTATGGCGTGGAGGTCCCAGATCTTGAGAGATGGGG AGGGCTAATGGAGCCAGGCCACAACTACTTCGAGAGGGGCAATTTGGACATTTTCAGTGGGAGAGGACCATGTTTGAATGCACCTGTGTGCGCCTTGAAC TTGACCTCTGATGGGTCAGGTTCAGGCCATGGTTGGTACGTTAACTACGTGGAGGTGACGACAACAGGGGTCCATGCGGCTTGTGCACAAAAGAAGTTCG AGATTGAGCAATGGCTGGCCCTTGATACTTCGCCTTATAGCTTAATTGCTTTTAGGGATTATTGTGATTATCTTGATGTTAAGAAATCCGCCGGAAGCTC TTCTATGTAA
AA sequence Show only first row Show all	>Potri.007G091100.1 pacid=42765579 polypeptide=Potri.007G091100.1.p locus=Potri.007G091100 ID=Potri.007G091100.1.v4.1 annot-version=v4.1 MSFRPLLLPLLLLLSFSSIVFSDEDCVYTMYVRTGSIIKGGTDSIISATLYDTYGYGVEVPDLERWGGLMEPGHNYFERGNLDIFSGRGPCLNAPVCALN LTSDGSGSGHGWYVNYVEVTTTGVHAACAQKKFEIEQWLALDTSPYSLIAFRDYCDYLDVKKSAGSSSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39730			Lipase/lipooxygenase, PLAT/LH2...		Potri.007G091100 [exp]	0	1
AT1G13380			Protein of unknown function (D...		Potri.010G124800 [exp]	4.69	0.8070
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.001G311600 [exp]	4.89	0.7720
AT2G18110			Translation elongation factor...		Potri.009G018600 [exp]	6.92	0.7831
AT1G12845			unknown protein		Potri.017G060400 [exp]	12.72	0.7664
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.001G295902 [exp]	13.78	0.7945
					Potri.015G099100 [exp]	16.24	0.7539
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.010G060400 [exp]	16.61	0.8032
AT5G17190			unknown protein		Potri.008G133600 [exp]	16.97	0.7477
AT3G21690			MATE efflux family protein (.1...		Potri.011G002800 [exp]	18.00	0.7020
AT4G35100		SIMIP, PIP3A, P...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.009G136600 [exp]	18.00	0.7344

Compare expression of checked genes

Potri.007G091100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.