Plant FIBer expression Database

Potri.007G091600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65170 72 / 3e-13 VQ motif-containing protein (.1)
AT1G35830 71 / 3e-13 VQ motif-containing protein (.1)
AT4G39720 69 / 9e-13 VQ motif-containing protein (.1)
AT2G41010 42 / 0.0004 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G076600
[exp]
504 / 7e-176 AT5G65170 70 / 7e-13 VQ motif-containing protein (.1)
Potri.005G166100
[exp]
159 / 1e-43 AT5G65170 94 / 8e-21 VQ motif-containing protein (.1)
Potri.002G094900
[exp]
101 / 7e-23 AT1G35830 89 / 1e-19 VQ motif-containing protein (.1)
Potri.001G158800
[exp]
50 / 9e-07 AT4G39720 58 / 6e-10 VQ motif-containing protein (.1)
Potri.016G029600
[exp]
47 / 1e-05 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1)
Potri.003G075800
[exp]
45 / 6e-05 AT3G22160 54 / 8e-09 VQ motif-containing protein (.1)
Potri.006G032300
[exp]
43 / 0.0004 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024738
[exp]
77 / 4e-15 AT1G35830 92 / 3e-21 VQ motif-containing protein (.1)
Lus10006941
[exp]
74 / 6e-14 AT1G35830 93 / 3e-21 VQ motif-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05678 VQ VQ motif
Representative CDS sequence
>Potri.007G091600.2 pacid=42765720 polypeptide=Potri.007G091600.2.p locus=Potri.007G091600 ID=Potri.007G091600.2.v4.1 annot-version=v4.1
ATGGATTCTGGCAATAGTGGAAGTATGCAATCCTCCAGTGGTGGAGATGAAGAGTATGATTCACGCGCTGAGTCAATCTCAGCTTTCTTGAACAACAATA
ACAACCCATTAAGCCATGTTGGTCCCATGTCTAGTAACCCACCACCACAACCAGAACACCACCACCACCACCAAACCCACCACTCTTCTTCATCATCAAC
GATGTTGTTTGACCCTTTATCAAACTATTTTGATCCTTTATCATCAGCATCATCAAGATCACCACCACCTCCTTTCACGAACCCAAACTCACTCCTCAAT
CTTGATATGGTTTGGTCTAAGAACTTAAGATCTGAACCCAATTGCACTGATCTTGGTGGCTTCATTTCGTCTTCCTCACCAACCCAACAGTTGTTTACCA
ACCAAACTCAAACTAGAACCACTTTTCAGTCTCTACCACCACATGGACATGAAAGTGCTACAAGAGGTCCAGTTTCAGGGACAAATGATCAAGTCAGTAA
CACTGCAGGGGTTAGAAACCCGAAGAAAAGATCAAGAGCTTCTAGGCGTGCACCAACTACTGTCTTGACCACAGACACCACCAATTTCAGAGCCATGGTT
CAGGAGTTTACAGGGATCCCTGCACCACCCTTCACATCCTCACCTTTCCCAAGAAGCAGGCTTGATCTATTTGGAACTGCAGCCTCCACTTTGAGATCAG
CTGTCTCTCACCATTTGGACCCTTCACCGCCTCCTTACCTTTTAAGACCGTTTGCTCAAAGATTCCAACCACCTCCACCGCCAGCACCACCATTTGCCTC
TTCAGGCTCTACTGCATCATCATTTTCTACTTCTATGGTTGATGCTATAGCCTCCACTACTACAACTAACATCAACAATTCCGGTGCTTGTACTAATAGT
ACTACTACTTCTAATATCTCCTCAACTTCCATTAACTACCAACTACCTTCTGATTTAGGCCTTTTGAAACAGCCGCACCACTTGCTCAACATCAACGTCC
AAAACCCAATTCTCAATTTCCACCCTCTTTTTCAAGCCCCTCACAAATATCCACTTCCAAATTCAACCAATATCCTTGGCACCACAAAAGCACAACAAGG
GTCTTCTTTAGAAATCCCATCAAATGATTCACATCTCAAAATGGGTGTTTTAGAAGAGTTCGGGATGAGCCATGGCCATGTTAGCACAAACCTTACAGGG
CTTCAAAATATAGTTTCATCATCATCGTCACCATCAGCAGATGCGACGTTAATGAGAAGAGGTGATCACAACAACAATCTTGCAAACTGGGGAGATGGGG
TTGGTTCAAATGAGGGTGGCCATCATCATCATCAACAACAACAAGGTCTTCTAAGGTCCATTAATGGCAATTACAATAACTCAACCCAGCGTGTTACAAA
CGGGAAAGTTAACTTCTTGGCTTCATCATCATCAGATTTTCGTGGTGATAATAAGGGGCAAGAGAATGTGGCTACAAGAAGTGAAGGTATGATGGAATCG
TGGATTTGTTCTTCTGATTAG
AA sequence
>Potri.007G091600.2 pacid=42765720 polypeptide=Potri.007G091600.2.p locus=Potri.007G091600 ID=Potri.007G091600.2.v4.1 annot-version=v4.1
MDSGNSGSMQSSSGGDEEYDSRAESISAFLNNNNNPLSHVGPMSSNPPPQPEHHHHHQTHHSSSSSTMLFDPLSNYFDPLSSASSRSPPPPFTNPNSLLN
LDMVWSKNLRSEPNCTDLGGFISSSSPTQQLFTNQTQTRTTFQSLPPHGHESATRGPVSGTNDQVSNTAGVRNPKKRSRASRRAPTTVLTTDTTNFRAMV
QEFTGIPAPPFTSSPFPRSRLDLFGTAASTLRSAVSHHLDPSPPPYLLRPFAQRFQPPPPPAPPFASSGSTASSFSTSMVDAIASTTTTNINNSGACTNS
TTTSNISSTSINYQLPSDLGLLKQPHHLLNINVQNPILNFHPLFQAPHKYPLPNSTNILGTTKAQQGSSLEIPSNDSHLKMGVLEEFGMSHGHVSTNLTG
LQNIVSSSSSPSADATLMRRGDHNNNLANWGDGVGSNEGGHHHHQQQQGLLRSINGNYNNSTQRVTNGKVNFLASSSSDFRGDNKGQENVATRSEGMMES
WICSSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65170 VQ motif-containing protein (.... Potri.007G091600
[exp]
0 1
AT1G72300 Leucine-rich receptor-like pro... Potri.001G161000
[exp]
2.00 0.8699
AT3G60110 DNA-binding bromodomain-contai... Potri.003G212500
[exp]
4.89 0.8157
AT1G70140 ATFH8 formin 8 (.1) Potri.008G192900
[exp]
5.19 0.8537
AT1G35830 VQ motif-containing protein (.... Potri.002G094900
[exp]
6.32 0.8435
AT4G02590 bHLH bHLH059, UNE12 unfertilized embryo sac 12, ba... Potri.005G053500
[exp]
6.92 0.8263
AT1G68130 C2H2ZnF IDD14beta, IDD1... indeterminate(ID)-domain 14 (.... Potri.008G140400
[exp]
8.77 0.8222
AT2G46020 CHA2, ATBRM, CH... CHROMATIN REMODELING 2, ARABID... Potri.014G086500
[exp]
8.94 0.8478
AT5G63200 tetratricopeptide repeat (TPR)... Potri.012G092000
[exp]
9.05 0.7799
Potri.017G152701
[exp]
9.79 0.8385
Potri.016G130101
[exp]
10.00 0.8072

Potri.007G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.