Plant FIBer expression Database

Potri.007G091800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10190 644 / 0 Major facilitator superfamily protein (.1)
AT1G78130 642 / 0 UNE2 unfertilized embryo sac 2, Major facilitator superfamily protein (.1)
AT4G36790 331 / 4e-108 Major facilitator superfamily protein (.1)
AT2G18590 282 / 2e-89 Major facilitator superfamily protein (.1)
AT3G46980 42 / 0.0007 PHT4;3 phosphate transporter 4;3 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G091700
[exp]
729 / 0 AT5G10190 660 / 0.0 Major facilitator superfamily protein (.1)
Potri.007G030800
[exp]
314 / 2e-101 AT4G36790 633 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038972
[exp]
698 / 0 AT5G10190 720 / 0.0 Major facilitator superfamily protein (.1)
Lus10027264
[exp]
362 / 1e-123 AT5G10190 337 / 1e-114 Major facilitator superfamily protein (.1)
Lus10041712
[exp]
306 / 1e-98 AT4G36790 663 / 0.0 Major facilitator superfamily protein (.1)
Lus10026037
[exp]
299 / 7e-96 AT4G36790 639 / 0.0 Major facilitator superfamily protein (.1)
Lus10027265
[exp]
82 / 2e-18 AT5G10190 129 / 3e-36 Major facilitator superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF07690 MFS_1 Major Facilitator Superfamily
Representative CDS sequence
>Potri.007G091800.1 pacid=42766547 polypeptide=Potri.007G091800.1.p locus=Potri.007G091800 ID=Potri.007G091800.1.v4.1 annot-version=v4.1
ATGAAACAAGAGACTCTGACATTAGTGCTAGTGAATCTAGCAGGGATTATGGAGAGAGCTGATGAGTCATTGTTACCAGGAGTGTACAAAGAAGTTGGTG
CAGCTTTACATACTGACCCCACTGGTTTGGGTTCATTAACTTTGTTTCGATCCATTGTTCAGTCTTCTTGTTATCCACTAGCTGCTTACCTTGCTGTGCA
TCATAATCGTGCCCATGTTATTGCTCTTGGTGCTTTTCTTTGGGCAGCCGCCACTTTCCTCGTTGCCATTTCTTCTACTTTCTTAGAGGTAGCGGTTTCA
AGAGGTCTAAATGGGATTGGACTGGCCATAGTCACACCTGCCATTCAGTCCCTTGTCGCTGATTCAACTGATGAAAGCAATCGTGGCATGGCATTTGGAT
GGCTACAGCTGACAGGAAACCTTGGTTCCATTATCGGAGGGCTCTGTTCAGTTCTAATAGCCTCAAGAACATTCATGGGAATACCTGGCTGGAGAGTTGC
TTTTCATCTGGTTGGAATAATTAGTGTAATTGTTGGTATTATGGTCCGCCTTTTTGCTAACGATCCACGCTTTTCTGATACTAATAGCAAAGCTAAAGAC
CAATCTCCCAAGTCTTTTATCTCAGAGGTGAAGTACCTGATGAAAGAAGCAAAGTCAGTTATAAAAATTCCATCATTCCAAATAATTGTGGCTCAAGGTG
TATCTGGATCCTTTCCTTGGTCAGCTTTATCATTCGCTCCTATGTGGTTGGAGCTCATTGGCTTCTCCCATGAAAAAACAGCATTTCTCATGACTCTTTT
TGTAGTTGCTGGGTCACTTGGTGGCCTGTTTGGAGGAAAGATGGGGGATGTCCTAGCTAAACGCTTTCCCAATTCTGGGAGGATATTTCTTTCACAGATA
AGCTCTGGTTCAGCCATACCATTGGCAGCAGTTTTGCTTCTTGTATTGCCTGATGATCCATCCACAACATTCATCCATGGTCTGGTCTTGTTCATCATGG
GATTTTGCATATCCTGGAATGGTCCAGCTACAAACAATCCAATATTTGCAGAGATAGTCCCACAGAAATCTCGAGCGAGCGTCTATGCTTTGGATCGATC
ATTCGAATCAGTGCTATCTTCATTTGCTCCCCCTACAGTAGGGATTTTGGCTCAGCATGTTTATGGTTATAAAACTCCCAAAAAATCATTAGACAGTGTC
CAAGTGATAACAGACCGAGAAAATGCTGCATCACTTGCAAAGGCACTCTACACAGCAATTGGCATTCCAATGGCATTATGTTGCTTCATCTACTCATTCC
TCTATTGCACGTACCCAAGAGACCGGGATAGGGCAAGGATGACTGCTTTGATAGAATTAGAAATGCAACAATTAGAGGCAGATGATTCTCCTTTGAGAGA
AGAACACACTCGATTGAATGTTTCAGAAACAAACGGACTGGATGGAGAGGAAAGAACCGAAATAGACATGAAGACTGGAAACAATGAGAGCATTGATTTC
GATGATGATGACGACAAGGCTCTACTCTATCGTCAGCTAACATTCTCAAATTTAGCAGACTGA
AA sequence
>Potri.007G091800.1 pacid=42766547 polypeptide=Potri.007G091800.1.p locus=Potri.007G091800 ID=Potri.007G091800.1.v4.1 annot-version=v4.1
MKQETLTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPLAAYLAVHHNRAHVIALGAFLWAAATFLVAISSTFLEVAVS
RGLNGIGLAIVTPAIQSLVADSTDESNRGMAFGWLQLTGNLGSIIGGLCSVLIASRTFMGIPGWRVAFHLVGIISVIVGIMVRLFANDPRFSDTNSKAKD
QSPKSFISEVKYLMKEAKSVIKIPSFQIIVAQGVSGSFPWSALSFAPMWLELIGFSHEKTAFLMTLFVVAGSLGGLFGGKMGDVLAKRFPNSGRIFLSQI
SSGSAIPLAAVLLLVLPDDPSTTFIHGLVLFIMGFCISWNGPATNNPIFAEIVPQKSRASVYALDRSFESVLSSFAPPTVGILAQHVYGYKTPKKSLDSV
QVITDRENAASLAKALYTAIGIPMALCCFIYSFLYCTYPRDRDRARMTALIELEMQQLEADDSPLREEHTRLNVSETNGLDGEERTEIDMKTGNNESIDF
DDDDDKALLYRQLTFSNLAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G10190 Major facilitator superfamily ... Potri.007G091800
[exp]
0 1
AT5G01850 Protein kinase superfamily pro... Potri.016G134900
[exp]
2.23 0.8331
AT3G61610 Galactose mutarotase-like supe... Potri.001G095300
[exp]
2.82 0.8159
AT5G09390 CD2-binding protein-related (.... Potri.003G023700
[exp]
4.24 0.8249
AT2G01430 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-... Potri.008G129500
[exp]
6.24 0.7768
AT5G22540 Plant protein of unknown funct... Potri.004G187100
[exp]
11.83 0.8136
AT3G12250 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (... Potri.001G029800
[exp]
15.49 0.7745
AT5G10900 Calcineurin-like metallo-phosp... Potri.001G196600
[exp]
16.24 0.7823
AT2G38640 Protein of unknown function (D... Potri.016G143000
[exp]
16.73 0.7476
AT1G05590 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-he... Potri.001G232800
[exp]
16.94 0.7457
AT3G23280 XBAT35 XB3 ortholog 5 in Arabidopsis ... Potri.018G011300
[exp]
17.88 0.8089

Potri.007G091800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.