Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10200 1085 / 0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT5G43120 505 / 4e-173 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT3G50030 408 / 2e-136 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT4G30480 47 / 1e-05 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT4G12400 47 / 3e-05 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G58620 47 / 4e-05 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G12270 45 / 0.0001 Hop1 Hop1, stress-inducible protein, putative (.1) AT5G21990 45 / 0.0002 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 45 / 0.0002 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G56090 44 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076300 [exp] 1207 / 0 AT5G10200 1113 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.002G120800 [exp] 560 / 0 AT5G43120 635 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G052300 [exp] 553 / 0 AT5G43120 580 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.011G021000 [exp] 50 / 4e-06 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.004G002900 [exp] 49 / 1e-05 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.015G036000 [exp] 46 / 5e-05 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.012G045000 [exp] 45 / 0.0001 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.001G205300 [exp] 44 / 0.0002 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.005G097300 [exp] 44 / 0.0003 AT1G56090 260 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006301 [exp] 1092 / 0 AT5G10200 1059 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10029573 [exp] 1091 / 0 AT5G10200 1056 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10024789 [exp] 460 / 9e-156 AT5G43120 533 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10018706 [exp] 462 / 1e-155 AT5G43120 534 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10028919 [exp] 49 / 1e-05 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 48 / 3e-05 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 47 / 6e-05 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10035117 [exp] 45 / 8e-05 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10024597 [exp] 44 / 0.0003 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10031983 [exp] 44 / 0.0003 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.007G092100.2 pacid=42765848 polypeptide=Potri.007G092100.2.p locus=Potri.007G092100 ID=Potri.007G092100.2.v4.1 annot-version=v4.1 ATGGATAAAGTTTCTCCCGACTGCCCATATCCAGGATGCTTCTTTTGTGTCATGAAGGAAGGAAATCCAAGCAAGCGAAGAGCAAGTATACTGAAATTCT TTAGAGAACTTCCTTCACAGGATGATGATGGCCAGGTTCTCCCGATCAGTGGACTGTGGAACACTGCTATGGCACATCCAAATGACCCCGAGTTCATTGA ATTGGGAATATTTGAATGTATGGCTGCTCTTATATGGAAGGGCTTAAAGAATCGCCGCTGGCTTTCTCATGACCAAAACGTATATATTCCTTACTATGCA GCTCATATTATTGGATCCTACACTATGAACATGGAAGAGTTTGCAGAAAGTGCTGTCCATGCTGGCGTAATTGCTCCCTTGGTTGAGCTTTTGAGGGGGA GATTGACATGGGTTGAACAAAGAGTGGCAGTACGAGCACTGGGGCACTTGGCCACATACACCAGCACTTTTCCTGCTGTGGCAAGTCATGGCGAAATCCT TGAACTCTCCATCCAACTAGCAATCAGTTCACTCGAAATAGTTTACTCACATTTTTACCAATATGTTGATAGAAGAATTAGTTATCATTGCGATTTGCTT ACCCGCGGCATGGGCGGTGTTGAAATGGAGTCCAGGAAAGCAGAGGAATGGGCTAGTCAGTTACAGTGCTGGTCACTTCAGCTCATTAATTGCTTTGCTT TCAAGCCCGAATTTCTTCCTACCATATGCAAGCCTGAATTCTTGGTAAAACTGCCAGGCATGTGGGGTGGGCTTGTTAATGAGAATTCCCCTGCTGGTAT TGGTTTATTAAGAACAATTTGTCATCATAAGCTTGGTAGGGGACCTGTTGCTAGCTGTCCTGGTATTATTGAGGCATTGTGTAATATAGCTAGGTCATCA GATGACTGGCAGTATATGGCTATAGACTGTCTTCTTTGGTTGATCCAAGATCCAAGTACATGCCATAAGGTCATTGATAAGGCAGTACCTGCACTTGTAG ACCTCGCAGAGATTACAAATCTGGGTGATCACAAAAAGCTTGGGGACACCATTGTTAATGTTCTTCAGGAGTGTTTGCAATCACAGGGGACAGGGCGTAA CACTATCAGCAACCGTGAAAGGGAACTGATTGAGGAACTATTGGATTCCAAACAAAGATTGAAATGGGAAAAGAACATGCCCAAAGAGGATCTTCATATT AAGCAGGCAGCTGCACTGGTGGTCAAGCTTGAAGGAAATTCCCTTTTCTCATCAGGAAACATAGCTGGAGCTGCATCAAAATATTCGGAAGCTTTGTCAT TGTGTCCAATGAGATCCAAAAAAGAGAGAGTTGTTCTGTACAGTAATCGAGCTCAGTGTTATCTTCTGTTACAACAGCCATTGGCAGCAATTAGTGATGC TACACATGCAGTGTGTCTTCACAACCCTCCTAACTGTCATGCCAAAAGCCTTTGGAGACGAGCTCAGGCTTATGACATGCTTGGCTTAGCTAAAGAGAGC TTGTTAGATGCCATTCTGTTCATTAACGAATGCTCTCAGACAAATGATCCTGACCTCTCTTTGAGGCAAAACAAAGTTCCTGACTATGCTGAGCGACTAG TCAAAAAGCAGATGCGTGCAGCTTGGTTATTTAGAGAGGCAGCCATCAAACATGGAGGTGTCCATGGTGAGGGTGATGTTGGTGACATCTATGGCCAGGA AAGTGATGGTTCAGAATGGGAAACAGCAAGTGAAAGTGACATGGGAAATGATGGGAGGGTTGAAATGGGTGACGATGACGATGATGATAGTGAATGGAAG AATGAAGATGGGAGGAAAGATAAATATGATAAAACAACATTAAAAGATATAAAGCATGGGTACAATTTGCATCTTGCAGAAGATGAATCTTGA
AA sequence Show only first row Show all	>Potri.007G092100.2 pacid=42765848 polypeptide=Potri.007G092100.2.p locus=Potri.007G092100 ID=Potri.007G092100.2.v4.1 annot-version=v4.1 MDKVSPDCPYPGCFFCVMKEGNPSKRRASILKFFRELPSQDDDGQVLPISGLWNTAMAHPNDPEFIELGIFECMAALIWKGLKNRRWLSHDQNVYIPYYA AHIIGSYTMNMEEFAESAVHAGVIAPLVELLRGRLTWVEQRVAVRALGHLATYTSTFPAVASHGEILELSIQLAISSLEIVYSHFYQYVDRRISYHCDLL TRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKPEFLPTICKPEFLVKLPGMWGGLVNENSPAGIGLLRTICHHKLGRGPVASCPGIIEALCNIARSS DDWQYMAIDCLLWLIQDPSTCHKVIDKAVPALVDLAEITNLGDHKKLGDTIVNVLQECLQSQGTGRNTISNRERELIEELLDSKQRLKWEKNMPKEDLHI KQAAALVVKLEGNSLFSSGNIAGAASKYSEALSLCPMRSKKERVVLYSNRAQCYLLLQQPLAAISDATHAVCLHNPPNCHAKSLWRRAQAYDMLGLAKES LLDAILFINECSQTNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHGGVHGEGDVGDIYGQESDGSEWETASESDMGNDGRVEMGDDDDDDSEWK NEDGRKDKYDKTTLKDIKHGYNLHLAEDES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.007G092100 [exp]	0	1
AT4G20430			Subtilase family protein (.1.2...		Potri.001G440300 [exp]	6.24	0.8825
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.005G176700 [exp]	7.34	0.8545
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.018G097000 [exp]	12.72	0.7969
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	13.74	0.8279
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	16.43	0.8506	Pt-TMKL1.1
AT1G11125			unknown protein		Potri.011G045700 [exp]	16.73	0.8508
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Potri.001G460300 [exp]	16.91	0.8726
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.014G105101 [exp]	21.35	0.8224
AT5G49880			mitotic checkpoint family prot...		Potri.004G228900 [exp]	21.70	0.8650
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.002G179100 [exp]	23.23	0.8191

Compare expression of checked genes

Potri.007G092100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.