Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39850 2061 / 0 AtABCD1, ACN2, CTS, PED3, PXA1 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) AT1G54350 184 / 5e-48 ABCD2 ATP-binding cassette D2, ABC transporter family protein (.1) AT3G28345 78 / 5e-14 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 73 / 2e-12 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 72 / 3e-12 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT1G70610 70 / 7e-12 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT2G07680 71 / 8e-12 ATMRP11, ABCC13 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) AT3G28360 69 / 2e-11 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT5G39040 68 / 3e-11 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT2G36910 67 / 9e-11 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076200 [exp] 2450 / 0 AT4G39850 2062 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.010G176400 [exp] 185 / 4e-48 AT1G54350 910 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Potri.006G074400 [exp] 83 / 2e-15 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 82 / 3e-15 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 78 / 5e-14 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.003G182601 [exp] 77 / 1e-13 AT2G07680 1759 / 0.0 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) Potri.015G059700 [exp] 75 / 3e-13 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.018G141400 [exp] 74 / 5e-13 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G059800 [exp] 72 / 2e-12 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024056 [exp] 1707 / 0 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041690 [exp] 1448 / 0 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041691 [exp] 631 / 0 AT4G39850 613 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10001758 [exp] 181 / 6e-47 AT1G54350 882 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10001839 [exp] 131 / 7e-31 AT1G54350 670 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10032911 [exp] 77 / 1e-13 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10041565 [exp] 76 / 2e-13 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10014427 [exp] 76 / 2e-13 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10023929 [exp] 76 / 2e-13 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10039458 [exp] 73 / 1e-12 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF06472 [poplar] [flax] ABC_membrane_2 ABC transporter transmembrane region 2
Representative CDS sequence Show only first row Show all	>Potri.007G092200.1 pacid=42765571 polypeptide=Potri.007G092200.1.p locus=Potri.007G092200 ID=Potri.007G092200.1.v4.1 annot-version=v4.1 ATGACTTCTCTTCAACTTTTGCAATTAACCGAGCGTGGTCGTGGTCTCTTGGCCAACAGAAGGAAATCTCTACTGCTTGCAGCTGGTGTCTTGGCTGCTG GTGGGACCGCTGCGTATGTGCAGTCACGGATTAGCTCTAAGAAATCTGATTCTTTCCTTCATTCCAATGGTCCCAAAGATGATAAAAAGATATCAAACAA GCTGGTTACTAATGACAAAAAAAATACACAAAAGAAAAGAGGTTTAAAGTCATTGCAAGTTTTAGCTGCAGTTCTTCTGTCTCGAATGGGTAAAATGGGT GCCAAGGACCTATTGGCTATGATTGCCATAGCAGTCTTGAAAACTACTTTGAGCAACAGATTAGCGAAAGTGCAGGGCTTTCTATTCCGTGCTGCTTTTC TCCGACGTGTACCATTATTTTTCCGTCTGATATCTGAAAATATCTTACTGTGTTTCCTTCTATCCACCATGCATTCTACTTCGAAGTATGTAACTGGGAC CTTAAGTCTCTGTTTCAGAAAAATACTGACAAAACTTATCCATGCGCATTATTTTGAGAACATGGCATATTATAAAATATCACATGTCGATGGTCGGATT ACTAACCCTGAACAAAGAATTGCAAGTGATGTACCAAGGTTCTGTTCAGAGTTGAGTGAACTTGTCCTGGATGATTTGACAGCAGTTGCCGATGGTGTGC TCTATACATGGCGTTTGTGTTCATATACTAGCCCTAAGTATTTGTTTTGGATGGTGGCCTATATATTGGGAGCAGGAACCTTGATTAAAAACTTCACTCC TGCTTTTGGGAAGCTGATGTCTAAAGAACAGCAGTTAGAAGGTGAATATAGGCAACTTCATTCACGTTTGAGGACCCATGCAGAAAGCATAGCATTTTAT GGTGGAGAACGCAGAGAAGAATTTCATATTCAGCAGAAGTTTGAGACCCTGATTAGACACATGAGCACTGTCCTGCATGACCAGTGGTGGTTTGGAATGA TTCAAGACTTTTTGTTTAAGTATCTTGGTGCTACTGTTGCTGTTATTTTGATTATTGAGCCCTTCTTTTCTGGCCAACTTAGACCCGACTCTTCAACTTT GGGAAGGGCAGAAATGTTGAGTAATTTAAGATATCATACCAGTGTTATAATATCTCTATTCCAGTCCCTGGGAACTCTTTCTACAAGTTCAAGACGACTT AATCGACTCAGTGGTTATGCTGACCGCATTCATGAATTAATATCGATATCAAGAGAGCTGAGCAATGATGATAAATCATCTCTGCAAAGAAGTGGAAGTA AGAACTACTTCAGTGAAGCTGATTATGTTGAGTTTTCTGGTGTCAAGGTTGTCACCCCAAGTGGAAATGTTTTGGTTCAAGATTTGACTCTTAAAGTTGA ATCAGGATCGAATCTGTTGATTACGGGTCCAAATGGCAGTGGGAAGAGCTCACTTTTTCGAGTTCTAGGTGGCTTATGGCCATTGGTTTCTGGCCATATT GTGAAACCAGGTGTTGGTTCTGATCTTAATAAGGAGATCTTCTATGTTCCACAAAGGCCATATACAGCGGTAGGCACACTCCGTGATCAATTAATTTATC CTCTTACCGCAGACCAAGAAATTGAACCACTGACCCATAGTGGAATGGTGGAGCTGTTAAAAAATGTCGACCTTGAGTATCTATTAGATCGTTATCCACC TGAGAAAGAGGTTAACTGGGGCGAGGAACTGTCATTGGGGGAGCAACAAAGGTTGGGGATGGCCAGGCTGTTCTACCATAAGCCTAAATTTGCAATTCTT GATGAGTGCACTAGTGCTGTGACTACTGACATGGAGGAACGTTTTTGTGCTAAAGTACAAGCAACGGGAACATCTTGCATAACCATATCTCATCGTCCAG CTCTAGTTGCATTTCATGATGTGGTTTTGTCCTTGGATGGAGAAGGAGGCTGGCATGTTAATTACAAAGGGAAGGACTCCCCAGCCCTGACTGAAGCTAG GAATGATATCACAGGGGCTTGTGAGACAGATCGCAAAAACGATGCTATGGTAGTCCAAAAAGCATTTTCTACAAGTGATAAGGTCGCACACTTGTATATC TCCGAGGTTATAGCAGCATCACCCAGCGTAGATCATAATCTTCCATTGCCCATCGTTCCACCACTTCAAAGGGCTCCAAGGGTATTGCCTCTGAGAGTAG CTGCCATGTTTAAAATACTGGTACCATCTATACTTGACAAACAAGGGGCACACCTATTGGCAGTTGCTTTCCTTGTTGTCTCAAGAACATTTGTGTCAGA TCGGATCGCCTCATTGAATGGTACAACTGTAAAGCTTGTTTTGGAGCAGGACAGAGCATCTTTTGTTCAATTAATAGGCGTCAGTGTTCTTCAAAGTGCT GCTTCTTCTTTTATTGCACCTTCATTGAGACACTTGAAAACCCTGCTGGCCCTTGGATGGAGGATTCGTTTGACTCAGCATCTACTAAAGAACTACTTGA GAAACAATACGTTTTACAAGGTCTTCAACATGTCTAGAAAAAATATTGATGCAGATCAGAGAATAACTCATGATCTGGAAAAGTTAACAACGGACTTGTC TGGACTGGTAACTGGAATGGTAAAGCCATCAGTAGATATCCTGTGGTTCACCTGGAGAATGAAGCTCTTAACAGGTCAGAGGGGAGTTGCCATATTGTAT ACTTATATGTTGCTTGGTTTGGGTTTTTTGAGGGCTGTTACTCCTGATTTTGGTGATCTTGCAAGTCAAGAGCAACAATTCGAAGGAACCTTTAGGTTCA TGCATGAGAGACTGCGCACGCATGCTGAGTCTGTTGCTTTCTTTGGTGGTGGCAAACGAGAAAAAGATATGATTGAGTCAAGATTCAGGGAACTCCTTGA CCATTCCATGTTACTTTTGAAAAAGAAATGGTCATATGGCATACTAGATGATTTTGTGACGAAGCAACTCCCAAATAATGTAACTTGGGGTTTGAGCTTG TTGTATGCTGTGGAAAACAATGGAGACCGAGCGATGTCCTCAACTCAAGGTGACCTGGCACATGCGCTGCGGTACTTAGCATCTGTTGTCTCTCAAAGCT TTTTAGCCTTTGGAGACATCCTTGAATTGCATAAGAAGTTTGCTGAGCTTTCTGGCAGTATAAATAGAATTTTTGAACTTGAAGAGCTTCTGGATTCTGC ACAGTCTGGGGATTCTTTGAATGGTAAATTATCTCCATCTAAGAACAGTGAACTTTACTCAAAAGATGCCATTTCCTTTATGGAGGTTGATATCATTACT CCAGCGCAGAAATTGTTGGCGAGGCAGTTGACATTTGACATAGGGCAAGGAAAAAGCTTGCTTCTCACTGGTCCGAATGGGAGTGGGAAAAGTTCTGTTT TCAGAGTCCTCAGAGGTCTTTGGCCCATTGTGAGTGGAAGACTCGCTAAACCATTACAACATATTAGTAAAGAGACTGGATCAGGTTGTGGTATCTTCTA TGTTCCTCAACGACCATATACATGCTTGGGAACACTGAGAGATCAAATCATATATCCTCTCTCTCATGATGAAGCAGAAGTCATGACTCTAAAGTTGTCT GAAAAAGGTATGCAATCCACTGAAATGACAAATATTCTGGATACACGTTTGAAAAATATTCTGGAGAATGTTCGGCTAAATTATCTCTTGGAGAGAGAAG GTGGCTGGGATGCGAATATGAATTGGGAGGACACCCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGGCTCGTCTATTCTTTCACAAGCCTAAATTTGC CATCCTTGATGAGTGCACAAATGCAACAAGTGTTGATGTTGAGGAACAACTTTATAGACTTGCCAAGGATATGGGCATCACATTTGTTACATCCTCTCAA CGTCCTGCTCTAATACCATTCCATTCCCTGGAATTACGGCTTATTGATGGTGAGGGCCAGTGGGAGCTTCGTGCAATTAAGCAATGA
AA sequence Show only first row Show all	>Potri.007G092200.1 pacid=42765571 polypeptide=Potri.007G092200.1.p locus=Potri.007G092200 ID=Potri.007G092200.1.v4.1 annot-version=v4.1 MTSLQLLQLTERGRGLLANRRKSLLLAAGVLAAGGTAAYVQSRISSKKSDSFLHSNGPKDDKKISNKLVTNDKKNTQKKRGLKSLQVLAAVLLSRMGKMG AKDLLAMIAIAVLKTTLSNRLAKVQGFLFRAAFLRRVPLFFRLISENILLCFLLSTMHSTSKYVTGTLSLCFRKILTKLIHAHYFENMAYYKISHVDGRI TNPEQRIASDVPRFCSELSELVLDDLTAVADGVLYTWRLCSYTSPKYLFWMVAYILGAGTLIKNFTPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFY GGERREEFHIQQKFETLIRHMSTVLHDQWWFGMIQDFLFKYLGATVAVILIIEPFFSGQLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSTSSRRL NRLSGYADRIHELISISRELSNDDKSSLQRSGSKNYFSEADYVEFSGVKVVTPSGNVLVQDLTLKVESGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI VKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEIEPLTHSGMVELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKFAIL DECTSAVTTDMEERFCAKVQATGTSCITISHRPALVAFHDVVLSLDGEGGWHVNYKGKDSPALTEARNDITGACETDRKNDAMVVQKAFSTSDKVAHLYI SEVIAASPSVDHNLPLPIVPPLQRAPRVLPLRVAAMFKILVPSILDKQGAHLLAVAFLVVSRTFVSDRIASLNGTTVKLVLEQDRASFVQLIGVSVLQSA ASSFIAPSLRHLKTLLALGWRIRLTQHLLKNYLRNNTFYKVFNMSRKNIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILY TYMLLGLGFLRAVTPDFGDLASQEQQFEGTFRFMHERLRTHAESVAFFGGGKREKDMIESRFRELLDHSMLLLKKKWSYGILDDFVTKQLPNNVTWGLSL LYAVENNGDRAMSSTQGDLAHALRYLASVVSQSFLAFGDILELHKKFAELSGSINRIFELEELLDSAQSGDSLNGKLSPSKNSELYSKDAISFMEVDIIT PAQKLLARQLTFDIGQGKSLLLTGPNGSGKSSVFRVLRGLWPIVSGRLAKPLQHISKETGSGCGIFYVPQRPYTCLGTLRDQIIYPLSHDEAEVMTLKLS EKGMQSTEMTNILDTRLKNILENVRLNYLLEREGGWDANMNWEDTLSLGEQQRLGMARLFFHKPKFAILDECTNATSVDVEEQLYRLAKDMGITFVTSSQ RPALIPFHSLELRLIDGEGQWELRAIKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	0	1
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	1.73	0.8816
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	2.82	0.8764
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G178000 [exp]	2.82	0.8729
AT1G14850		NUP155	nucleoporin 155 (.1)		Potri.008G134800 [exp]	3.00	0.8755
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	6.92	0.8651
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.009G034900 [exp]	7.34	0.8369
AT3G06670			binding (.1.2)		Potri.010G142200 [exp]	8.66	0.8683
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Potri.018G039500 [exp]	10.24	0.8383
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Potri.009G002100 [exp]	10.95	0.8156
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.008G043700 [exp]	11.22	0.8178

Compare expression of checked genes

Potri.007G092200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.