Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39860 384 / 4e-135 unknown protein AT1G78150 261 / 7e-87 unknown protein AT1G35780 257 / 4e-85 unknown protein AT2G22270 224 / 7e-72 unknown protein AT2G22260 49 / 1e-06 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076000 [exp] 481 / 4e-173 AT4G39860 354 / 3e-123 unknown protein Potri.002G095300 [exp] 349 / 3e-121 AT1G35780 364 / 2e-127 unknown protein Potri.005G165500 [exp] 344 / 3e-119 AT1G35780 357 / 2e-124 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041695 [exp] 395 / 4e-139 AT4G39860 399 / 1e-140 unknown protein Lus10024053 [exp] 392 / 4e-130 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10020921 [exp] 321 / 5e-110 AT1G35780 367 / 1e-128 unknown protein Lus10033456 [exp] 311 / 4e-106 AT1G35780 362 / 1e-126 unknown protein Lus10009931 [exp] 69 / 5e-15 AT1G35780 107 / 2e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13266 [poplar] [flax] DUF4057 Protein of unknown function (DUF4057)
Representative CDS sequence Show only first row Show all	>Potri.007G092400.1 pacid=42766278 polypeptide=Potri.007G092400.1.p locus=Potri.007G092400 ID=Potri.007G092400.1.v4.1 annot-version=v4.1 ATGGAGAGGAATGCAGCCGTGAGCAAGCCACACACTTCCACCGCCGATCTGCTGACGTGGAAGGAGGCTCCTCCCTCTGCCTCTCCTTCCTCCGCCTCCT CCCACCGCCCTCACCAGCCGTCTGATAAAATCAGTAAAGTGCTGTTTGGAGGTCAGGTCTCTCAAGAAGAAGCAGAGAGTCTCATGAAGAAAAAGCCTTG TTCGGGGTATAAATTAAAGGAGATGACTGGCAGTGGCATATTTAATGGTCAAGATGGTACATCTGAATCTGGTGATGCTAATCCTAATAACAAAACTACA GTGCGTGTTTATCAGCAAGCAGTGACTGGAATAAGCCAAATATCGTTTAGTTCTGAGGAGAGCATCTCCCCTAAGAAGCCTACCTCTGTCCCAGAAGTGG CAAAGCAGCGCGAGTTAAGTGGGACGTTGCAAAATGATTTTGACATGAAGAGCAACAAGCTAATATCAAATGCTAAATTCAAGGAGATCAGTGGTCATGA CATTTTTGCCCCCCCTTCTGAAATTGCTCCCCGTTCATTGGCTGCTGCACGCTCCATGGAAACAAAAGAAAACAAAGACATCGGGGAACCTGCACCTCGA AACATTCGCACATCTGTCAGGGTTTCAAATCCTGCTGGAGGCCAGAGCAATATCCTATTTGGTGAAGAACCAGTCATGAAGACAGCAAGGAAAATACACA ACCAGAAGTTTAATGAGCTGACAGGCAATGGTATTTTCAAGGGAGATGTTCCTCCTGGATCTGCTGAAAAACCTCTAAGCACGGCAAAACTGAGAGAAAT GAGCGGCAGTGGTATCTTTTCTGATGGAAAGGCACCATCCAGAGATTATCTTGGTGGTGTTCGCCAGCCCCCTGGTGGTCAGAGCAGCATTGCATTAGTA TAA
AA sequence Show only first row Show all	>Potri.007G092400.1 pacid=42766278 polypeptide=Potri.007G092400.1.p locus=Potri.007G092400 ID=Potri.007G092400.1.v4.1 annot-version=v4.1 MERNAAVSKPHTSTADLLTWKEAPPSASPSSASSHRPHQPSDKISKVLFGGQVSQEEAESLMKKKPCSGYKLKEMTGSGIFNGQDGTSESGDANPNNKTT VRVYQQAVTGISQISFSSEESISPKKPTSVPEVAKQRELSGTLQNDFDMKSNKLISNAKFKEISGHDIFAPPSEIAPRSLAAARSMETKENKDIGEPAPR NIRTSVRVSNPAGGQSNILFGEEPVMKTARKIHNQKFNELTGNGIFKGDVPPGSAEKPLSTAKLREMSGSGIFSDGKAPSRDYLGGVRQPPGGQSSIALV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39860			unknown protein		Potri.007G092400 [exp]	0	1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.015G059100 [exp]	6.00	0.8843
AT4G15790			unknown protein		Potri.008G207500 [exp]	6.40	0.8892
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.006G249200 [exp]	8.36	0.8317
AT5G04160			Nucleotide-sugar transporter f...		Potri.006G046600 [exp]	16.15	0.8818
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Potri.007G096000 [exp]	18.33	0.8695	Pt-ATGB3.4
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	18.65	0.8795	Pt-SAH7.1
AT3G08600			Protein of unknown function (D...		Potri.006G111700 [exp]	19.77	0.8534
AT3G49720			unknown protein		Potri.001G288200 [exp]	22.91	0.8714
AT1G10030		ERG28	homolog of yeast ergosterol28 ...		Potri.002G112700 [exp]	27.16	0.8418
AT4G29360			O-Glycosyl hydrolases family 1...		Potri.002G007300 [exp]	29.39	0.8534

Compare expression of checked genes

Potri.007G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.