Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ANN1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65020 488 / 2e-175 ANNAT2 annexin 2 (.1.2) AT5G10230 458 / 1e-163 ANN7, ANNAT7 annexin 7 (.1) AT5G10220 455 / 2e-162 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT1G35720 422 / 2e-149 ATOXY5, ANNAT1 annexin 1 (.1) AT5G12380 310 / 3e-105 ANNAT8 annexin 8 (.1) AT2G38760 226 / 2e-72 ANN3, ANNAT3 annexin 3 (.1) AT1G68090 211 / 1e-66 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 169 / 4e-50 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075900 [exp] 587 / 0 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.002G095600 [exp] 465 / 3e-166 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.003G200700 [exp] 342 / 5e-118 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 289 / 4e-97 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.001G024800 [exp] 257 / 2e-84 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.012G041900 [exp] 215 / 4e-68 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 209 / 7e-66 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.001G024900 [exp] 204 / 6e-64 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.008G139500 [exp] 189 / 4e-58 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024054 [exp] 442 / 3e-157 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 435 / 4e-154 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10008227 [exp] 416 / 8e-147 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 414 / 5e-146 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10041140 [exp] 363 / 4e-126 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 353 / 2e-122 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10019780 [exp] 305 / 2e-103 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10024174 [exp] 260 / 1e-85 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10024172 [exp] 258 / 6e-85 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 230 / 4e-73 AT2G38760 323 / 2e-109 annexin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [poplar] [flax] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Potri.007G092500.2 pacid=42766505 polypeptide=Potri.007G092500.2.p locus=Potri.007G092500 ID=Potri.007G092500.2.v4.1 annot-version=v4.1 ATGGCGTCCCTTAAAGTTCCAGCTTCTGTTCCTCCTCCATATGAGGATGCTGAGCAACTTCATAAAGCTTTTGAAGGATGGGGTACAAATGAGGGATTGA TCATCTCCATCCTGGCTCATAGGAATGCTGCACAACGCAACTTAATTCGAAAGGTTTATGCTGAAGCTTACGGCCAAGATCTCCTTAAAGATTTGGACAA GGAACTTTCTAGTGACTTCGAGAGGGCTGTGTTGCTATGGACACTGGATCCTGCTGAGCGTGATGCATATCTGGCTAATGAAGCGACGAAGAGGTTCACT TCAAGCAACTGGGTTCTAATGGAAATAGCTTGTACTAGGTCCTCACATGACCTTTTTAAGGTGAGGCAGGCATATCATGCTCGTTACAAGAAATCCCTCG AGGAAGATGTTGCATACCACACAACTGGAGACTTCCGCAAGCTGTTGGTTCCCCTTGTAAGTGCATTCCGATATGAGGGAGAAGAGGTGAACACGATTTT GGCAAAATCAGAGGCTAAGATACTTCATGAGAAGATCTCAGATAAAGCTTATAGTGATGAAGAGATCATCAGGATTCTGACTACAAGGAGCAAGGCACAA CTTAATGCAACACTTAATCACTACAACAACGCATTTGGAAATGCCATCAACAAGAATTTGAAGGAAGAGGCGGATAACGATTTCCTCAAATTACTGAGAG CAACGATTAAGTGCTTGACCTACCCTGAAAAATACTTTGAGAAGCTTTTGCGGCTGTCCATCAAAAAGCTAGGAACAGATGAAAGGGCTCTTACTAGAGT TGTAACCACCAGGGCTGAGGTTGACATGGAACGTATCAAGGAGGAATATCATCGCCGAAATAGTGTTACTCTTGAACGTGACATTGCTGGAGACACTTCC GGAGATTATGAACGAATGCTTCTTGCCTTGATTGGCCATGGCGATGCTTGA
AA sequence Show only first row Show all	>Potri.007G092500.2 pacid=42766505 polypeptide=Potri.007G092500.2.p locus=Potri.007G092500 ID=Potri.007G092500.2.v4.1 annot-version=v4.1 MASLKVPASVPPPYEDAEQLHKAFEGWGTNEGLIISILAHRNAAQRNLIRKVYAEAYGQDLLKDLDKELSSDFERAVLLWTLDPAERDAYLANEATKRFT SSNWVLMEIACTRSSHDLFKVRQAYHARYKKSLEEDVAYHTTGDFRKLLVPLVSAFRYEGEEVNTILAKSEAKILHEKISDKAYSDEEIIRILTTRSKAQ LNATLNHYNNAFGNAINKNLKEEADNDFLKLLRATIKCLTYPEKYFEKLLRLSIKKLGTDERALTRVVTTRAEVDMERIKEEYHRRNSVTLERDIAGDTS GDYERMLLALIGHGDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65020		ANNAT2	annexin 2 (.1.2)		Potri.007G092500 [exp]	0	1	ANN1.2
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Potri.013G119500 [exp]	2.82	0.8986
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.008G009500 [exp]	8.48	0.8353
AT3G15540	AUX_IAA	MSG2, IAA19	MASSUGU 2, indole-3-acetic aci...		Potri.001G177500 [exp]	10.67	0.8589
AT5G66330			Leucine-rich repeat (LRR) fami...		Potri.007G016800 [exp]	11.53	0.8690
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	16.37	0.8902	APFI.1
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Potri.007G051600 [exp]	17.23	0.8536
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.009G026800 [exp]	17.46	0.8748
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Potri.005G076900 [exp]	17.88	0.8514
AT4G16450			unknown protein		Potri.006G016300 [exp]	20.19	0.8818
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.016G015400 [exp]	22.27	0.8767

Compare expression of checked genes

Potri.007G092500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.