Plant FIBer expression Database

Potri.007G092700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39870 415 / 2e-144 TLD-domain containing nucleolar protein (.1.2)
AT2G05590 207 / 3e-64 TLD-domain containing nucleolar protein (.1.2)
AT5G06260 74 / 3e-14 TLD-domain containing nucleolar protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G075800
[exp]
616 / 0 AT4G39870 405 / 1e-140 TLD-domain containing nucleolar protein (.1.2)
Potri.010G065900
[exp]
218 / 5e-68 AT2G05590 286 / 6e-96 TLD-domain containing nucleolar protein (.1.2)
Potri.006G206200
[exp]
76 / 8e-15 AT5G06260 604 / 0.0 TLD-domain containing nucleolar protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041697
[exp]
492 / 4e-175 AT4G39870 419 / 4e-146 TLD-domain containing nucleolar protein (.1.2)
Lus10024053
[exp]
491 / 3e-167 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2)
Lus10014476
[exp]
206 / 2e-63 AT2G05590 307 / 4e-104 TLD-domain containing nucleolar protein (.1.2)
Lus10023727
[exp]
192 / 1e-54 AT1G04500 315 / 3e-100 CCT motif family protein (.1)
Lus10021306
[exp]
72 / 2e-13 AT5G06260 574 / 0.0 TLD-domain containing nucleolar protein (.1)
Lus10016984
[exp]
62 / 2e-10 AT5G06260 460 / 5e-161 TLD-domain containing nucleolar protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07534 TLD TLD
Representative CDS sequence
>Potri.007G092700.2 pacid=42766701 polypeptide=Potri.007G092700.2.p locus=Potri.007G092700 ID=Potri.007G092700.2.v4.1 annot-version=v4.1
ATGGGAAAGCAACAAAAGTCGTTAAGGAGCAAAGCAGTCCACTTCGTGTCTGATCTCACCACTGTCATCCTTAATCCTATCTCTGATAAACCCTCCAAGC
ATCCCACTCCTCTTCCTCATCCTCCTCCTGAAGATGTCAGTGAGTCAAAAAGGAGTCAGCTAGAGTTCGTTACTGAAGAGGATACAGGGCACTTAGTTGA
GGAGCCTGATACTTCTTCGTTTACTGCGTTCTTATACTCTTTGTTATCGTCCTCAGAGTCTGGAAATAATCCAAAATTGGATGAGCAAAATGATCATTCA
GCACAAATGGGTGACCAGCTATCAGAGAATGTAGCAAAAGAGAGTGGCACAAAAAAGGGGTTATTTTCAAGGGGCAAACAAACTCTAAGAGCTGTTTACC
AAGCTACAAGAATTGGTGGAAATCGGAGCCAAGAAAGCAAGGGTAATTCAGACTTGAAAAATGTTGATGAGAATGATGATTTTGGTGGGCTTGAGGTGAA
GATGCCGAGGCAGAACATGAAAGAGCCTGTTGCTTTGGGAGATCTTCCAGGCATATCTGAACCTTCATTGCTTCTTTCAGAGAAAGAAAGAAGCACCCTT
TATGTTTCCCTTCCAGCACTTGTTCAAGGGAGGAAATGGTTATTGCTCTACAGTACATGGAGGCACGGGATATCTCTTTCAACCTTGTATAGAAGAAGCA
TGCTTTGGTCTGGACATAGCTTGCTGGTTGTTGGAGATCGCAAGGGGGCAGTATTTGGTGGCTTGGTTGAAGCTCCGCTAAGGCCAACCAACAAGAAATA
TCAGGGAACGAATAGTACATTTGTTTTCACAAATAAACCTGGTCATCCTGTTATATTCCGTCCTACAGGTGCTAATCGTTATTTCACTTTGTGCTCCACT
GACTTTCTTGCAATTGGTGGAGGTGGCCGCTTTGCACTCTACATGGACAGTGATCTATTAAATGGATCAAGTTCGGTCTCGGAAACCTATGGGAACCCTT
GTCTTGCACACACAGAAGACTTTGAAGTTAAGGAAGTTGAGTTGTGGGGCTTTGTATATGGTTCAAAGTATGAGGAAATACTTGCTTTAAGCAGAACTGA
GTCTCCTGGGATTTGTCGGTTTTGA
AA sequence
>Potri.007G092700.2 pacid=42766701 polypeptide=Potri.007G092700.2.p locus=Potri.007G092700 ID=Potri.007G092700.2.v4.1 annot-version=v4.1
MGKQQKSLRSKAVHFVSDLTTVILNPISDKPSKHPTPLPHPPPEDVSESKRSQLEFVTEEDTGHLVEEPDTSSFTAFLYSLLSSSESGNNPKLDEQNDHS
AQMGDQLSENVAKESGTKKGLFSRGKQTLRAVYQATRIGGNRSQESKGNSDLKNVDENDDFGGLEVKMPRQNMKEPVALGDLPGISEPSLLLSEKERSTL
YVSLPALVQGRKWLLLYSTWRHGISLSTLYRRSMLWSGHSLLVVGDRKGAVFGGLVEAPLRPTNKKYQGTNSTFVFTNKPGHPVIFRPTGANRYFTLCST
DFLAIGGGGRFALYMDSDLLNGSSSVSETYGNPCLAHTEDFEVKEVELWGFVYGSKYEEILALSRTESPGICRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39870 TLD-domain containing nucleola... Potri.007G092700
[exp]
0 1
AT2G11890 adenylate cyclases (.1.2) Potri.003G198200
[exp]
3.46 0.7263
AT5G49900 Beta-glucosidase, GBA2 type fa... Potri.019G072800
[exp]
4.58 0.6637
AT3G14830 unknown protein Potri.001G386700
[exp]
10.77 0.6501
AT5G50230 Transducin/WD40 repeat-like su... Potri.015G087200
[exp]
15.09 0.7065
AT1G06650 2-oxoglutarate (2OG) and Fe(II... Potri.010G073100
[exp]
15.16 0.6226
Potri.002G093800
[exp]
16.24 0.6351
AT1G62710 BETAVPE, BETA-V... beta vacuolar processing enzym... Potri.001G119800
[exp]
17.74 0.5972
Potri.008G176700
[exp]
21.21 0.5948
AT5G17165 unknown protein Potri.013G081700
[exp]
22.18 0.6138
AT3G52060 Core-2/I-branching beta-1,6-N-... Potri.008G018600
[exp]
24.00 0.6097

Potri.007G092700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.