Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65000 429 / 6e-152 Nucleotide-sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075600 [exp] 550 / 0 AT5G65000 461 / 2e-164 Nucleotide-sugar transporter family protein (.1.2) Potri.016G113200 [exp] 51 / 6e-07 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026182 [exp] 415 / 3e-146 AT5G65000 446 / 1e-158 Nucleotide-sugar transporter family protein (.1.2) Lus10042484 [exp] 311 / 1e-104 AT5G65000 341 / 1e-116 Nucleotide-sugar transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF04142 [poplar] [flax] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Potri.007G092800.1 pacid=42765838 polypeptide=Potri.007G092800.1.p locus=Potri.007G092800 ID=Potri.007G092800.1.v4.1 annot-version=v4.1 ATGGTGACGACGAAGCTAAAAGGTGGAACCACCAGGTTGGAGAGAACGAACCCAAGGGTTTGGCTATACTCCGTTTTGCTCACTCTTCAATACGGAGCCC AGCCTCTCATCTCCAAACGCTTCACCAGACGTGAAGTAATCGTGACTACATCTGTTTTGACATGTGAGTTAGCTAAGGTTGTATGTGCCCTAGTTCTCAT GGTAAGAGATGGTAGTTTGAAGAAAATGTTCAGCCAGTGGACTTTGGTTGGTTCGTTGACTGCATCCGGACTTCCTGCAGCAATTTATGCGCTGCAAAAC AGCTTGCTGCAGATATCATACAAGAATCTTGATTCACTCACATTTTCAATATTGAACCAGACAAAAATAATTTTTACTGCATTCTTTACATACATAATGT TGAGGCAGAAGCAATCAATTCAACAAATTGGGGCTTTGTTGTTGCTGATAATGGCAGCTGTTCTTCTAAGCATTGGTGAAGGCTCTAGCAAAGGCTCTAG CAGTAGTGACCCTGAGCAAATTTTATTTTATGGGATCATTCCGGTCCTTGTTGCTTCTGTTCTCTCTGGTCTTGCTTCAGCTTTGTGTCAATGGGCTTCT CAGGTTAAGAAACACTCGTCGTACTTGATGACTGTAGAAATGTCAATTGTTGGAAGCTTGTGCTTGTTGGCCAGTACCACTAAGTCTCCAGATGGAGAAG CTATCAGACAGCATGGATACTTTTATGGTTGGACTCCACTAACTATGATCCCAGTTGTAGCCAATGCTCTTGGTGGAATTCTTGTTGGCCTTGTCACAAG CTATGCTGGTGGTGTGAGAAAGGGGTTTGTCATTGTTTCTGCACTTCTTGTAACGGCCTTGCTTCAGTTCATGTTTGAAGGGAAACCACCTTCAGTGTAC TGTCTTGTGGCTCTTCCACTCGTCATGAGCAGCATTTCAATATACCAGAAATATCCATATAGAGTTAACAAGAAGGAATCATAA
AA sequence Show only first row Show all	>Potri.007G092800.1 pacid=42765838 polypeptide=Potri.007G092800.1.p locus=Potri.007G092800 ID=Potri.007G092800.1.v4.1 annot-version=v4.1 MVTTKLKGGTTRLERTNPRVWLYSVLLTLQYGAQPLISKRFTRREVIVTTSVLTCELAKVVCALVLMVRDGSLKKMFSQWTLVGSLTASGLPAAIYALQN SLLQISYKNLDSLTFSILNQTKIIFTAFFTYIMLRQKQSIQQIGALLLLIMAAVLLSIGEGSSKGSSSSDPEQILFYGIIPVLVASVLSGLASALCQWAS QVKKHSSYLMTVEMSIVGSLCLLASTTKSPDGEAIRQHGYFYGWTPLTMIPVVANALGGILVGLVTSYAGGVRKGFVIVSALLVTALLQFMFEGKPPSVY CLVALPLVMSSISIYQKYPYRVNKKES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65000			Nucleotide-sugar transporter f...		Potri.007G092800 [exp]	0	1
AT5G64180			unknown protein		Potri.015G005600 [exp]	12.60	0.8818
					Potri.001G466500 [exp]	20.92	0.8659
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.010G224300 [exp]	29.18	0.8627	ADK2.2
AT5G52180			unknown protein		Potri.015G140900 [exp]	45.23	0.8495
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Potri.010G109500 [exp]	52.22	0.8386	PGM1.1
AT5G24170			Got1/Sft2-like vescicle transp...		Potri.012G012700 [exp]	59.59	0.8393
AT5G42000			ORMDL family protein (.1.2)		Potri.001G086300 [exp]	66.34	0.8357
AT5G01460			LMBR1-like membrane protein (....		Potri.016G116200 [exp]	75.33	0.8391
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.006G077900 [exp]	75.85	0.8427	PBA1.2
AT1G27170			transmembrane receptors;ATP bi...		Potri.012G053200 [exp]	76.64	0.8404

Compare expression of checked genes

Potri.007G092800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.