Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10250 706 / 0 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT5G64330 467 / 4e-156 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT1G30440 338 / 2e-107 Phototropic-responsive NPH3 family protein (.1) AT5G03250 335 / 4e-107 Phototropic-responsive NPH3 family protein (.1) AT5G13600 333 / 3e-106 Phototropic-responsive NPH3 family protein (.1) AT5G67385 330 / 7e-105 Phototropic-responsive NPH3 family protein (.1) AT3G44820 317 / 4e-99 Phototropic-responsive NPH3 family protein (.1) AT5G67440 307 / 2e-96 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT5G66560 304 / 3e-94 Phototropic-responsive NPH3 family protein (.1) AT3G08570 301 / 1e-93 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075400 [exp] 1059 / 0 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 510 / 7e-174 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 509 / 2e-173 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.013G024400 [exp] 381 / 6e-125 AT5G10250 331 / 5e-106 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 361 / 1e-116 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 358 / 3e-115 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 347 / 2e-111 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 334 / 4e-106 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 327 / 3e-103 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026046 [exp] 854 / 0 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 845 / 0 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 367 / 2e-118 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 365 / 7e-118 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 345 / 6e-110 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 335 / 3e-106 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 333 / 9e-106 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 333 / 1e-105 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 320 / 7e-101 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 320 / 3e-100 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.007G093000.1 pacid=42766281 polypeptide=Potri.007G093000.1.p locus=Potri.007G093000 ID=Potri.007G093000.1.v4.1 annot-version=v4.1 ATGTTCGGTGCCCTCACAGCAATGCCGTACATCCTCATTGTAACCATGAAGAAGTCCCTTCTTGTAGTTCAATCACAAAGCTCAGAGAGTGATTCTGATG GCACTGATCAAGCTCACAACCAGAGCATCGTAGTTCCGACTACAGTCATTGCGATAGCCGATAGCATCCAAAAGAAAGATAACTCATGGGTTGTTACTTC CCAAATCGCTACAGATCTATCGATTCAAGTTCAAGACGTCACTTTTACTGTTCACAAGTATCCCTTGGTATCAAAATGTGGCTACATAGGCCGCCTGGAA CTTCAGCCTTCGATTTCAAATTTTGGGTACGAACTCAAGCTTGAAAACTTCCCAGGTGGATCAGAAGCATTCAAAATCATTCTAAAATTCTGTTATGGTC TCCCGTTAGACTTAAACCCTAGCAACAGTGCTCCACTACGATGCGCATCAGAATTCCTAGAAATGAGTGAAGAGATTGATGATGGAAATCTCATCTCAAA GACAGAAGCTTTCCTCACATTTGTAGTCCTCTCATCGTGGAAAGACACCATCACTGTTCTCAAATCATGCGAAACTTTATCTCCATGGGCTGAAAATCTT CAAATAGTTAGAAGATGTTGTGACTCAATAGCATGGAAGGCTCCTAGAGACAATTCAATGGTTAATGATGAAGGATGGTGCTTTGATGATGTGGCTTCCC TTCGCATTGATCATTTCATGAGAATTATAACTGCAATAAGGGCAAGGGGAGCAAAACCAGAGATCATAGGTAAATGTATCATGCGATATGCAGATAGATG GTTGCCAGGCATGGATGCAGAGTTAGAAGGACTAAGAGGGTATGGGTATGGAAAGAATGAACTGCAGTTCAGTATTTTGATCGGAAGGAAGGAGGACGAG GGTATTGAACATAGCAAGGAGCAAAAATCTATTATTGAAAGCCTAGTAAGCATACTTCCTTCTCAACCAGAAGCAGCCCCATGTAAGTTCTTGCTGAAGA TGTTGAAAATGGCAATGGTTTACTCTGCATCCCAAGCTTTGATTGCAGAGCTTGAGAAGAGAGCAGGGATGATGTTGGAGAATGCCAATGTGAATGATCT TTTGATTCCTAATTATAAAAGTGAAGATCAGGGGAAAATGGTCAAGTCACTTGAAAAACAAACAATGCACAACACAGATGTGGTACAAAGAATGGTGGAG TATTTTTTGATGCATGAACAAGAGAAGCAACAACTGCCACCGACATCAGGGAAATCAAGTGTTAGCAAGCTTTTGGAAAATTACCTAGCTGAGGTAGCAA AGGACCCTAATCTTTCCATTACCAAATTTCAAGTTTTGGCTGACGCCCTGCCAGAGAGAGCTCGGTCATGTGATGATGGTCTTTATAGAGCCATTGACAC CTATCTCAAGACTCATCCTTCGCTCTCTGAGTACGACCAAAGAAGGCTATGCAAAATAATGAGCTGTGGGAAGCTATCACTTGATGCGCGCATGCATGCA GCACAAAATGATAGGTTGCCTCTAAGAACAGTGATTCAGGTGTTGTTCTCAGAGCAAGTAAAGATGAGGGCAGCAATGCAAGGAAAAGAACCAGCAGCAA GTGATAACAACTCAGAACAGGAAATAACTCAAACATCAACAAAAACTGAGATCATGACCTTAAGAGCAGAACTTGAGAACGTAAAGACGCAAATGACAGA GCTGCAGAGGGACTATTCTGAACTGCAACATGAATATGAAAAGCAAAACAACAAGCATAGAAATGGATCAGCTTGGAATTTTGGGTGGACAAAGATCAGA ACATCAGCTCTTTTCCATAGAAAATTAGATGGGAATGAAGGTGGAGAAGGACACCAGAGATCAAATTCACTTGGTAGCAAAATCAATTTCAGAAGACGAC TATCCATATCATAA
AA sequence Show only first row Show all	>Potri.007G093000.1 pacid=42766281 polypeptide=Potri.007G093000.1.p locus=Potri.007G093000 ID=Potri.007G093000.1.v4.1 annot-version=v4.1 MFGALTAMPYILIVTMKKSLLVVQSQSSESDSDGTDQAHNQSIVVPTTVIAIADSIQKKDNSWVVTSQIATDLSIQVQDVTFTVHKYPLVSKCGYIGRLE LQPSISNFGYELKLENFPGGSEAFKIILKFCYGLPLDLNPSNSAPLRCASEFLEMSEEIDDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENL QIVRRCCDSIAWKAPRDNSMVNDEGWCFDDVASLRIDHFMRIITAIRARGAKPEIIGKCIMRYADRWLPGMDAELEGLRGYGYGKNELQFSILIGRKEDE GIEHSKEQKSIIESLVSILPSQPEAAPCKFLLKMLKMAMVYSASQALIAELEKRAGMMLENANVNDLLIPNYKSEDQGKMVKSLEKQTMHNTDVVQRMVE YFLMHEQEKQQLPPTSGKSSVSKLLENYLAEVAKDPNLSITKFQVLADALPERARSCDDGLYRAIDTYLKTHPSLSEYDQRRLCKIMSCGKLSLDARMHA AQNDRLPLRTVIQVLFSEQVKMRAAMQGKEPAASDNNSEQEITQTSTKTEIMTLRAELENVKTQMTELQRDYSELQHEYEKQNNKHRNGSAWNFGWTKIR TSALFHRKLDGNEGGEGHQRSNSLGSKINFRRRLSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.007G093000 [exp]	0	1
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G218200 [exp]	1.73	0.9652	Pt-AUX22.4
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152900 [exp]	4.00	0.9625
AT5G38610			Plant invertase/pectin methyle...		Potri.003G086600 [exp]	4.47	0.9534
					Potri.004G213900 [exp]	8.48	0.9581
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.012G035800 [exp]	9.64	0.8918
					Potri.004G156500 [exp]	10.39	0.9418
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	11.66	0.9136
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072741 [exp]	16.73	0.9417
AT1G44000			unknown protein		Potri.002G075700 [exp]	18.52	0.9066
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G035500 [exp]	18.97	0.9333	Pt-GST30.1

Compare expression of checked genes

Potri.007G093000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.