Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39900 171 / 9e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145000 [exp] 45 / 6e-06 AT4G39900 45 / 3e-06 unknown protein Potri.010G097100 [exp] 43 / 4e-05 AT4G21215 48 / 4e-07 unknown protein Potri.004G023000 [exp] 40 / 0.0005 AT4G21215 108 / 2e-29 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024045 [exp] 246 / 1e-81 AT4G39900 131 / 4e-37 unknown protein Lus10041703 [exp] 208 / 4e-67 AT4G39900 118 / 2e-32 unknown protein Lus10018373 [exp] 40 / 0.0006 AT4G21215 87 / 3e-21 unknown protein Lus10007639 [exp] 40 / 0.0007 AT4G21215 83 / 1e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G093200.1 pacid=42765947 polypeptide=Potri.007G093200.1.p locus=Potri.007G093200 ID=Potri.007G093200.1.v4.1 annot-version=v4.1 ATGGCTACTGATTCCTTCACCAAGGAAAGCGAGTACTTTCCAGCTGCGAATTTTGATGGAAGTTGCGATTTGCCTGTTGGAGACTCGTATTTCCAGTCAC TAAAGCCGAGTTTTGACGAGGTCACCCAGCATTGTTCTTTAGATGCTTTGCCTATAATCATTGATGAGGCGTCGTTTCCGGTTGAAGAAAAATGTGCCTT TCGCAATTCACATGGCCAAGATGTCTTTGATTTTTCGATGCTGTCCGAGGAAAGCAAGACCACTTCACAATTTACATCTCAGCTAGCCTTTCTAAGCTTT GTAGAGCTTCCTTTACCACCGAAGAAGCAGATGTGCTTAGATGCTCAATTCAGTTGCCATAACTTCATTGATTTACAGATGGAAAGTGAAGATTCTTATT CACCATGCGTTGTGGATATAGATATTGAGATGGAAACTATTGCAAAACCCAAATCTGGTGGTATAACTGTTGGAAGTATAGAAAACGAAGATCCATTAAC TGGGGTGGTGCAGAGACAGGCAAACCTGAAAACATGTGGGAGATTCATGCAACTTTTTACAAATCATGGATCATCATTGCTGAAGTTAATTTCTAAAGAC AAGTCATTCACTGAGAGAGTTCATGATACACCAAACAACAGATGGAGAAGATATAAGCGTGCATCCTCATTTGATTCAAGAAAAATTGTTCTCCTATTCT CAATCATGTCAAGTTTGGGTACGTTGATATTGATATATCTAACACTGAGAGTGAGGCAGACGGTTGATGGGTATGTCAATGTCTAA
AA sequence Show only first row Show all	>Potri.007G093200.1 pacid=42765947 polypeptide=Potri.007G093200.1.p locus=Potri.007G093200 ID=Potri.007G093200.1.v4.1 annot-version=v4.1 MATDSFTKESEYFPAANFDGSCDLPVGDSYFQSLKPSFDEVTQHCSLDALPIIIDEASFPVEEKCAFRNSHGQDVFDFSMLSEESKTTSQFTSQLAFLSF VELPLPPKKQMCLDAQFSCHNFIDLQMESEDSYSPCVVDIDIEMETIAKPKSGGITVGSIENEDPLTGVVQRQANLKTCGRFMQLFTNHGSSLLKLISKD KSFTERVHDTPNNRWRRYKRASSFDSRKIVLLFSIMSSLGTLILIYLTLRVRQTVDGYVNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39900			unknown protein		Potri.007G093200 [exp]	0	1
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	3.00	0.8347
AT5G28150			Plant protein of unknown funct...		Potri.005G050900 [exp]	3.31	0.8525
AT1G09812			unknown protein		Potri.003G006900 [exp]	4.24	0.8169
					Potri.016G013000 [exp]	4.89	0.8217
AT2G20390			unknown protein		Potri.014G193150 [exp]	5.00	0.8196
AT1G14890			Plant invertase/pectin methyle...		Potri.008G132600 [exp]	5.19	0.8137
AT3G05936			unknown protein		Potri.005G000800 [exp]	6.32	0.8123
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.005G040400 [exp]	8.36	0.8154	Pt-HPT2.3
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	12.96	0.8109
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.017G068400 [exp]	13.41	0.7982

Compare expression of checked genes

Potri.007G093200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.