Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64970 516 / 0 Mitochondrial substrate carrier family protein (.1) AT1G78180 437 / 7e-152 Mitochondrial substrate carrier family protein (.1) AT4G32400 162 / 1e-45 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G55640 147 / 1e-40 Mitochondrial substrate carrier family protein (.1) AT5G51050 147 / 2e-39 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 143 / 1e-38 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 140 / 9e-38 Mitochondrial substrate carrier family protein (.1) AT3G53940 140 / 1e-37 Mitochondrial substrate carrier family protein (.1) AT4G26180 137 / 7e-37 Mitochondrial substrate carrier family protein (.1) AT3G51870 133 / 8e-35 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G165200 [exp] 517 / 0 AT5G64970 499 / 6e-176 Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 162 / 7e-46 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 157 / 1e-43 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 149 / 4e-41 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 149 / 6e-41 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 147 / 2e-40 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.010G197400 [exp] 144 / 4e-39 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 144 / 4e-39 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 142 / 2e-38 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014334 [exp] 520 / 0 AT5G64970 499 / 7e-174 Mitochondrial substrate carrier family protein (.1) Lus10026043 [exp] 515 / 0 AT5G64970 482 / 8e-169 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 159 / 2e-44 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 158 / 4e-44 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 155 / 3e-43 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 152 / 7e-42 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 151 / 5e-41 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 145 / 1e-38 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 145 / 2e-38 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 142 / 2e-38 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.007G093300.1 pacid=42765140 polypeptide=Potri.007G093300.1.p locus=Potri.007G093300 ID=Potri.007G093300.1.v4.1 annot-version=v4.1 ATGTACGGTCAAGATCATCATTTCTTTGCCTCTTTATTCAAAGACAAAGAATCTGAACTGCCGGATCAACAACCCTTCATTCTCGGGGGTCTGTTCCTAG ATCATAAAACCATCTGTCCTCCTTCCTTTGTTTCTATAGTTTCTTCAAAGAAGAAGGGAAACAATGACAGTCATTCCTATTTGTCGAAAAGAACCTTGTT AAGGTTTGAGAATATGCGGCGGCGAGGTAGGAAAGGTGGCGTGTTTTTATCTGTTAGCTTGTCAATAAAGGGGGGAGAAGAAGATGGAGATGAAGGGAAT GTTGGGGAGTCAATTGAGAGTTTGGGGCAAGATGGGGTTGAGAAAAATGTCGAGTTGGTGGAGGAGAAGGAGGTTGAAGTGAAGAGATCCGGTACTTCAG CAGCGTTGAATACAACTAAACATCTATGGGCTGGTGTTGTGGCTGCTATGGTTTCAAGGACTCTTGTAGCACCTCTTGAGAGGCTGAAGCTGGAGTACAT AGTTCGCGGTGAACAGAAGAATCTTTTTGAGGTCATCAAGGCGATTGCGGCGACACAAGGGTTGAAAGGTTTTTGGAAGGGAAACTTTGTCAATATTCTT CGCACTGCTCCATTTAAGTCCATCAATTTCTATGCTTATGATACATACAGAAATCAACTTCTAAAATTGTCTGGGAATGAGGAAACCACAAATTTTGAGA GGTTCCTTTCTGGTGCTGCTGCTGGAATTACTGCTACTTTGCTTTGCTTGCCGATGGACACTATAAGAACGAAGATGGTTGCACCTGGTGGGGAAGTTTT GGGTGGTGTAATTGGCACTTTCCACCACATGATCCAGACAGAAGGTTTCTTTTCTCTTTATAAGGGTTTACTACCCTCGTTAGTGGCAATGGCGCCTTCA GGTGCTGTTTACTATGGTGTTTATGATATGCTAAAATCAACTTATCTTCACTCGCCGGAAGGAATGAAGAGAATTCTGAACATCAAACAAGAAGGTCAGG AATTAAATGCATTGGAACAGCTGGAGTTGGGTACCATGAGAACATTGCTTTATGGGGCAATTGCTGGTTGTTGCTCTGAAGCTGCTACGTATCCATTTGA AGTTGTGCGGAGACAGCTTCAAATGCAAGTCCAGGCAACAAAGATGAGTGCATTGGCAACTTGCATAAAGATAGTTGAGCAAGGAGGCATTCCTGCTCTT TATGCAGGTTTAATTCCCAGCCTATTGCAGGTTTTACCATCAGCTTCAATAAGTTACTTTGTATACGAGTTCATGAAGATAGTGCTCAAAGTCGAGTCAA CATAG
AA sequence Show only first row Show all	>Potri.007G093300.1 pacid=42765140 polypeptide=Potri.007G093300.1.p locus=Potri.007G093300 ID=Potri.007G093300.1.v4.1 annot-version=v4.1 MYGQDHHFFASLFKDKESELPDQQPFILGGLFLDHKTICPPSFVSIVSSKKKGNNDSHSYLSKRTLLRFENMRRRGRKGGVFLSVSLSIKGGEEDGDEGN VGESIESLGQDGVEKNVELVEEKEVEVKRSGTSAALNTTKHLWAGVVAAMVSRTLVAPLERLKLEYIVRGEQKNLFEVIKAIAATQGLKGFWKGNFVNIL RTAPFKSINFYAYDTYRNQLLKLSGNEETTNFERFLSGAAAGITATLLCLPMDTIRTKMVAPGGEVLGGVIGTFHHMIQTEGFFSLYKGLLPSLVAMAPS GAVYYGVYDMLKSTYLHSPEGMKRILNIKQEGQELNALEQLELGTMRTLLYGAIAGCCSEAATYPFEVVRRQLQMQVQATKMSALATCIKIVEQGGIPAL YAGLIPSLLQVLPSASISYFVYEFMKIVLKVEST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64970			Mitochondrial substrate carrie...		Potri.007G093300 [exp]	0	1
AT4G01400			unknown protein		Potri.002G179600 [exp]	6.70	0.9122
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.008G128600 [exp]	7.74	0.9226
AT5G11640			Thioredoxin superfamily protei...		Potri.006G237600 [exp]	12.96	0.9130
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.015G028200 [exp]	17.32	0.9018
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Potri.016G054200 [exp]	19.36	0.8731	Pt-AGK2.2
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.008G100000 [exp]	21.26	0.9108	ARF1.3
AT4G24130			Protein of unknown function, D...		Potri.001G084200 [exp]	21.35	0.8999
AT5G60980			Nuclear transport factor 2 (NT...		Potri.017G094600 [exp]	22.02	0.8671
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.009G165300 [exp]	24.00	0.8466	SLY1.2
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.016G088200 [exp]	24.81	0.9021	SYP71.2

Compare expression of checked genes

Potri.007G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.