Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22300 992 / 0 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G64220 838 / 0 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 785 / 0 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT1G67310 314 / 8e-91 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT3G16940 255 / 2e-71 CAMTA calmodulin binding;transcription regulators (.1) AT4G16150 245 / 2e-67 CAMTA calmodulin binding;transcription regulators (.1) AT4G35450 51 / 2e-06 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 46 / 0.0001 AKR2B ankyrin repeat-containing 2B (.1) AT2G47450 46 / 0.0001 CPSRP43, CAO CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) AT2G03430 44 / 0.0004 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075100 [exp] 1794 / 0 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G153100 [exp] 457 / 9e-144 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.001G057800 [exp] 331 / 3e-97 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.003G170600 [exp] 322 / 4e-94 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.008G107900 [exp] 266 / 1e-74 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.010G141700 [exp] 259 / 2e-72 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G099733 [exp] 99 / 6e-25 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.004G210100 [exp] 52 / 2e-06 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 51 / 2e-06 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003405 [exp] 846 / 0 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10024044 [exp] 753 / 0 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10041704 [exp] 745 / 0 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10036162 [exp] 645 / 0 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10003119 [exp] 347 / 1e-103 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 340 / 9e-100 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10037738 [exp] 285 / 2e-81 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10016873 [exp] 280 / 2e-79 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 253 / 5e-70 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 145 / 3e-35 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0159 [poplar] [flax] E-set PF01833 [poplar] [flax] TIG IPT/TIG domain CL0159 [poplar] [flax] PF03859 [poplar] [flax] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Potri.007G093400.3 pacid=42765058 polypeptide=Potri.007G093400.3.p locus=Potri.007G093400 ID=Potri.007G093400.3.v4.1 annot-version=v4.1 ATGGCTGACACTAAACGGTACCCTCTTGGTAACCAGCTAGATATTCAGCAAATACTGCTAGAAGCGCAGCATCGATGGCTACGACCTGCTGAAATTTGTG AAATTCTTACCAATTATCAGAGATTTCGTATTGCCCCAGAACCTGCACATATGCCTCCAAGTGGTTCACTGTTCCTCTTTGATCGCAAAGTGCTCAGATA CTTCAGAAAAGATGGCCATAACTGGAGGAAGAAAAAAGATGGGAAAACTGTGAAAGAAGCTCATGAGAGGCTCAAGTCTGGAAGTGTTGATGTGCTGCAT TGCTATTATGCACATGGAGAAGATAACGAAAATTTTCAAAGACGCAGTTATTGGTTGCTTGAAGAGGAACTTTCACACATTGTACTTGTCCACTATCGGG AAGTAAAGCAGGGAACCAGGACAAATTTTAACCGCATTAAAGAGCATGAAGAATGTATTCCTTACTCTCAAGAAACTGAAGACACAATGCCCAGTTCAGA GATGGACACTTCTGTTTCTTCCCGTTTCCACCCTAATGGTTACCAGGTGCCTACAAGAACTACAGATACAACAAGCATGAATAGCGCTCAGGCATCAGAA TATGAGGATGCTGAATCAGTATATAATAACCAAGCCAGTTCCACATTTCATTCTTTTCTTGAGGTGCAAAAGCCTGCAATGGAGAGAATTGATACAGGCT CATCTGTTCATTATGATCACATGACGTTTTCAAGTGATTATCAAGGCAAATTGTCAGCTGTTCCTGGGATGGACGTCATCTCACTTGCCCAAGTGGATAA AACTAAAGAAACTAATGGTACTGAATCAGCATGTGAGCCTCAGAAAGTCATTGACTTGCCGTCGTGGGAGGATGTATTAGAAAATTATGCTCGTGGAACT GAATCTGTGCCTTTCCAGACTCTTTTGTCACAAGATGATACGGTAGGAATCATCCCTAAACAAGAAGATGGAATACTGGAGAAGCTTTTAACCAATAGCT TTGATAAAAGGGAGGATATTGGGAGTCATATACTTGATCAGGAAGCATGGCAGTCTATGGAGGGTGTTTCTTCACATCTATTAAAGTGGTCCGTGGATCA AAAGTTGCTTCTGAACTCAGGATACGATCTCACTGCTAGGTTTCCTGATCAACAACTTGATAGTGGCAACTTAATCAATACTCTTGAGCCTTTATGTACA CAGGAAAACGATCTCCATATCCAAAATGACATTCAAATACAGCCTGCAAATGCAGATCATGGTATGACCCTAGAGGGAAAATCAATGTACTCTTCTTCGG TGAAACATCATATATTGGATGGTTCAGGGACAGAAGGTTTGAAGAAGCTTGATAGTTTCACCCGATGGATGAGTAAAGAACTTGGAGATGTAGAGCCACA GGTGCAGTCCAGTTCTGGGTCCTATTGGATTACTGCAGAAAGTGAAAACGGGGTTGATGACTCCAGCAATCCTTCTCAAGGAAACCTGGATGCATATTTG CTTTCTCCTTCTCTCTCCCAGGACCAACTCTTTAGCATTATTGATTTCTCACCCAACTGGGCATATGCAGGCACAGAGATCAAGGTCCTAATCATGGGAA GATTCTTGAAGGGTCGAGAAGCAGCAGAAAACTGCCAGTGGTCAATTATGTTTGGAGAAGTTGAAGTTCCTGCAGAGGTTATAGCTGATGGTGTTCTTCG TTGCAATACTCCCTCGCATAAGGCTGGCAGGATTCCTTTTTATGTTACATGTTCAAATAGGGTAGCTTGTAGTGAGGTGCGTGAATTTGAATACCTCAGC CACACCCAAGATATTACCTATTACTATAGTGACAGTGTTACTGAAGATCTTAATATGCGATTTGGAAAACTACTGTCCCTGAGCTCTGTCTCCCCTTCAA AATATGACTCCAGCAGTGTGGATGAGATTTTGAGCAGTAAAATCAACTCATTGCTGAATGAGGACAATGAAACATGGGACCAAATGTTTAAGCTTACTTC AGAGGAGGGGTTTTCCTCAGAAAAAGTAAAGGAACAGCTTGTTCAAAAGCTACTCAAAGAACAATTACATGTATGGCTTTTGCAGAAGGCATCTGAAGGT GGAAAAGGCCCTAGCGTATTAGATGAGGGTGGCCAAGGGGTGCTACATTTTGCAGCCGCCCTTGGCTATGATTGGGCCCTGGAACCTACTATAGTTGCTG GTGTAAGTGTCAATTTTCGCGATGTTAATGGATGGACTGCACTTCATTGGGCAGCATCTTATGGCAGAGAGCGAACAGTTGCATCCCTCATCCATCTAGG TGCCGCTCCTGGAGCATTAACAGATCCAACACCCAAATATCCCACCAGCAGAACACCTGCTGACTTAGCTTCTGCTAATGGACACAAAGGAATTTCCGGC TTTCTTGCAGAATCTGCTTTGAGTGCCCACCTTTCTTCTCTGAATTTGGAAAAGCAGGATGGCAAGGCTGCAGAATGTTCTGGAACACAAGCATCACAGA CAGTTTCAGGCTGTAATGCAACTCCAGTCAATGATGCTGACTTGCCAAGTCGACTGCCCCTGAAGGATTCATTAGCTGCTGTTTGTAATGCTACTCAAGC TGCTGCTCGTATTCACCAAGTCTTCAGAGTTCAGTCCTTCCAAAAGAAGCAGTTAAAAGAGTATGGTGATGATAAATTGGGAATGTCACATGAGCGCGCT CTTTCGCTTATTGCAGTCAAGTCACAGAAGGCAGGGCAATACGATGAGCCTGTTCATGCTGCAATACGAATTCAGAACAAGTTCCGTGGTTGGAAGGGTA GAAAAGAATTTTTGATAATCCGGCAGCGAATTGTTAAAATTCAGGCCCATGTAAGAGGCCACCAGGTCAGGAAAAACTACAGGAAGATAATTTGGTCTGT AGGCATTCTGGATAAGATTATCTTACGTTGGAGACGGAAAGGAAGTGGTTTGCGTGGCTTCAAATCTGAAGCACTTACTGATGGTTCCAGCATGCAAGTT GTCCAGTCAAAGGATGACGATGATGATTTCCTTAAAGAAGGCAGAAGGCAAACAGAAGAAAGATCACAAATAGCCCTTGCAAGGGTGAAATCCATGCATC AGCATCCAGAGGCAAGAGAACAATATTGCAGGCTGCGCAATGTTGTTGCTGAGATCCAGGAGGCCAAGGCTATGGGCGAATGGGCTAACAATTCTGAAGT GATGGCCGAGTTTGATGACCTGGTCGATCTTGGAACATTAATGGATGATGACTCTTTCATGCCTTCAAATTCTTGA
AA sequence Show only first row Show all	>Potri.007G093400.3 pacid=42765058 polypeptide=Potri.007G093400.3.p locus=Potri.007G093400 ID=Potri.007G093400.3.v4.1 annot-version=v4.1 MADTKRYPLGNQLDIQQILLEAQHRWLRPAEICEILTNYQRFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSVDVLH CYYAHGEDNENFQRRSYWLLEEELSHIVLVHYREVKQGTRTNFNRIKEHEECIPYSQETEDTMPSSEMDTSVSSRFHPNGYQVPTRTTDTTSMNSAQASE YEDAESVYNNQASSTFHSFLEVQKPAMERIDTGSSVHYDHMTFSSDYQGKLSAVPGMDVISLAQVDKTKETNGTESACEPQKVIDLPSWEDVLENYARGT ESVPFQTLLSQDDTVGIIPKQEDGILEKLLTNSFDKREDIGSHILDQEAWQSMEGVSSHLLKWSVDQKLLLNSGYDLTARFPDQQLDSGNLINTLEPLCT QENDLHIQNDIQIQPANADHGMTLEGKSMYSSSVKHHILDGSGTEGLKKLDSFTRWMSKELGDVEPQVQSSSGSYWITAESENGVDDSSNPSQGNLDAYL LSPSLSQDQLFSIIDFSPNWAYAGTEIKVLIMGRFLKGREAAENCQWSIMFGEVEVPAEVIADGVLRCNTPSHKAGRIPFYVTCSNRVACSEVREFEYLS HTQDITYYYSDSVTEDLNMRFGKLLSLSSVSPSKYDSSSVDEILSSKINSLLNEDNETWDQMFKLTSEEGFSSEKVKEQLVQKLLKEQLHVWLLQKASEG GKGPSVLDEGGQGVLHFAAALGYDWALEPTIVAGVSVNFRDVNGWTALHWAASYGRERTVASLIHLGAAPGALTDPTPKYPTSRTPADLASANGHKGISG FLAESALSAHLSSLNLEKQDGKAAECSGTQASQTVSGCNATPVNDADLPSRLPLKDSLAAVCNATQAAARIHQVFRVQSFQKKQLKEYGDDKLGMSHERA LSLIAVKSQKAGQYDEPVHAAIRIQNKFRGWKGRKEFLIIRQRIVKIQAHVRGHQVRKNYRKIIWSVGILDKIILRWRRKGSGLRGFKSEALTDGSSMQV VQSKDDDDDFLKEGRRQTEERSQIALARVKSMHQHPEAREQYCRLRNVVAEIQEAKAMGEWANNSEVMAEFDDLVDLGTLMDDDSFMPSNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.007G093400 [exp]	0	1
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	4.47	0.8478
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.002G226600 [exp]	5.74	0.7794	NFR1.1
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.002G046800 [exp]	7.00	0.7652
AT4G23000			Calcineurin-like metallo-phosp...		Potri.014G034400 [exp]	9.16	0.8082
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.006G205600 [exp]	9.21	0.7981
AT5G18750			DNAJ heat shock N-terminal dom...		Potri.010G018800 [exp]	12.40	0.8266
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Potri.010G190100 [exp]	13.41	0.7727
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.006G075500 [exp]	13.96	0.8296
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	15.49	0.8207
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.018G020200 [exp]	15.87	0.8147

Compare expression of checked genes

Potri.007G093400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.