Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39920 166 / 1e-49 TFCC, POR TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074700 [exp] 231 / 9e-75 AT4G39920 332 / 6e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012318 [exp] 194 / 2e-60 AT4G39920 333 / 2e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) Lus10006364 [exp] 193 / 4e-60 AT4G39920 344 / 1e-117 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [poplar] [flax] CAP_C-like PF07986 [poplar] [flax] TBCC Tubulin binding cofactor C
Representative CDS sequence Show only first row Show all	>Potri.007G093800.2 pacid=42766824 polypeptide=Potri.007G093800.2.p locus=Potri.007G093800 ID=Potri.007G093800.2.v4.1 annot-version=v4.1 ATGGAAGAAGAATCGCCGCCGCCATCAGATCTCTCAAGTCCGAATCCAACCAGTCCCATGGACCATGCACTCCAAAAAAAGCACCAAGCAATGCTAGACC GCCTGTCCAACCGCCACCAATCCCGACAAAAAACTGCCTCCACCGCCTCCTTCCTCTCCACATTCACCGATTCCAAAAGCTCAATCGAATCCCAACTCAC CCAACACAACAGATCCTGCTCGCTTAAAATCTCATATAGCCAACATCTCTTCCCTCGAAAAACTCAAAATCAAACTCTAACAAAAAATCTCAAGAATTTT AAAGAGTTTGGAGAATTTTCGCTGTCGGATATGAATTCATGTGAAGTGAAATTGATTGGCTGCGTTAACGCAATGTTTGTTAACAGATTGAGGAATTGTA GGGTTTACACGGGACCTGTGATTGGTTCAATTTTGATAGAGGAAGTAGAGAACTGCTTGTTTGTTTGTGATTTTTATTTGAGAGTGAGGAGTGGGCCGAT AATTGAGGATTGTGGAGCTGTGAGATTCGCGCCGTTTTTTTTGAGATATGAGGGGATTGAGGAGGATTTGAGGGAAGCTGGGTTGGAAGAGGAGGATTTG AATTGGGAAAATGTCGATGATTTTAAGTGGTTGAGAGCGGTTAAACCACCGAGTTGGTCGGTTTTGGAGGACAGTGAAAGGATTGGAAGAGTGGAGGTTG AGGATCCTGAAAGAGCATAA
AA sequence Show only first row Show all	>Potri.007G093800.2 pacid=42766824 polypeptide=Potri.007G093800.2.p locus=Potri.007G093800 ID=Potri.007G093800.2.v4.1 annot-version=v4.1 MEEESPPPSDLSSPNPTSPMDHALQKKHQAMLDRLSNRHQSRQKTASTASFLSTFTDSKSSIESQLTQHNRSCSLKISYSQHLFPRKTQNQTLTKNLKNF KEFGEFSLSDMNSCEVKLIGCVNAMFVNRLRNCRVYTGPVIGSILIEEVENCLFVCDFYLRVRSGPIIEDCGAVRFAPFFLRYEGIEEDLREAGLEEEDL NWENVDDFKWLRAVKPPSWSVLEDSERIGRVEVEDPERA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.007G093800 [exp]	0	1
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.007G109000 [exp]	8.66	0.7749
AT4G01290			unknown protein		Potri.014G089200 [exp]	9.74	0.7490
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.012G055000 [exp]	10.19	0.7624
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G262900 [exp]	12.16	0.7036
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	15.19	0.7457
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	16.61	0.7392
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	17.97	0.7523
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.016G138000 [exp]	18.16	0.7662
AT1G54215			proline-rich family protein (....		Potri.001G169200 [exp]	20.34	0.6655
AT4G32160			Phox (PX) domain-containing pr...		Potri.018G026000 [exp]	27.71	0.7638

Compare expression of checked genes

Potri.007G093800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.