Plant FIBer expression Database

Potri.007G093850 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G093850.1 pacid=42765439 polypeptide=Potri.007G093850.1.p locus=Potri.007G093850 ID=Potri.007G093850.1.v4.1 annot-version=v4.1
ATGAACATATCCCGTATGAACAAGATTATCCGCGCTTTATCCCGAGAAGAAAAGCCCGCAGAGAGGGCGAGGGTAGTGTTGCATGAAACTGCATATATTG
ACAAGGAAGAAAAGGACGAAGGCATCCACAAATGTCATAGACGCATTGTCTTGATGAGGTTTAAACTCAAAGGAGAACGTGTTTTAGGTTTTAAAGACGG
TAGAAATTCAGTGTTTGCTGCACCAACTTCTCCTCTAACCAGCTACCTCAATGGTCAAATGGGTAATGTCCTTTTCATCATCATGTTACTATCTCTGAGA
GTTAGTTTTATGATTAAACTTAAGCATTTTGACAACCATTTACCCCGCACTGTTGAAAACATTTGGTGA
AA sequence
>Potri.007G093850.1 pacid=42765439 polypeptide=Potri.007G093850.1.p locus=Potri.007G093850 ID=Potri.007G093850.1.v4.1 annot-version=v4.1
MNISRMNKIIRALSREEKPAERARVVLHETAYIDKEEKDEGIHKCHRRIVLMRFKLKGERVLGFKDGRNSVFAAPTSPLTSYLNGQMGNVLFIIMLLSLR
VSFMIKLKHFDNHLPRTVENIW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G093850
[exp]
0 1
AT2G48010 RKF3 receptor-like kinase in in flo... Potri.005G040200
[exp]
2.64 0.8284
AT1G34670 MYB ATMYB93 myb domain protein 93 (.1) Potri.007G093900
[exp]
3.46 0.8075
AT1G19300 ATGATL1, GATL1,... PARVUS, GAOLAOZHUANGREN 1, GAL... Potri.002G132900
[exp]
4.24 0.8249
AT5G24580 Heavy metal transport/detoxifi... Potri.012G007300
[exp]
4.58 0.8095
AT1G73830 bHLH bHLH050, BEE3 BR enhanced expression 3 (.1.2... Potri.012G055700
[exp]
6.70 0.8058
AT1G78440 ATGA2OX1 Arabidopsis thaliana gibberell... Potri.011G095600
[exp]
12.48 0.7539 GA2ox6,GA2.8
AT4G04960 Concanavalin A-like lectin pro... Potri.011G053200
[exp]
13.26 0.7865
AT5G26594 ARR24 response regulator 24 (.1) Potri.002G253000
[exp]
13.41 0.7854
AT5G51330 DYAD, SWI1 SWITCH1 (.1) Potri.001G126901
[exp]
17.02 0.7486
AT1G68300 Adenine nucleotide alpha hydro... Potri.008G121800
[exp]
21.16 0.7904

Potri.007G093850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.