Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19540 623 / 0 Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 129 / 7e-33 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 122 / 3e-30 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 113 / 4e-27 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19520 112 / 2e-26 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 103 / 1e-23 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT1G29260 71 / 3e-13 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G34460 66 / 9e-12 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT5G52820 64 / 1e-10 WD-40 repeat family protein / notchless protein, putative (.1) AT3G63460 60 / 3e-09 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074400 [exp] 779 / 0 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 124 / 4e-31 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 123 / 1e-30 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 120 / 1e-29 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 114 / 1e-27 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 110 / 5e-26 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 106 / 2e-24 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G151800 [exp] 105 / 2e-24 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G057600 [exp] 69 / 2e-12 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024403 [exp] 673 / 0 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10025341 [exp] 664 / 0 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10020916 [exp] 126 / 2e-31 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 125 / 2e-31 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027848 [exp] 124 / 5e-31 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 124 / 6e-31 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033459 [exp] 123 / 1e-30 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027632 [exp] 105 / 3e-24 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 102 / 3e-23 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011936 [exp] 99 / 5e-22 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF12265 [poplar] [flax] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Potri.007G094000.1 pacid=42765467 polypeptide=Potri.007G094000.1.p locus=Potri.007G094000 ID=Potri.007G094000.1.v4.1 annot-version=v4.1 ATGGTTCGCAGCATAAAAAATCCAAAGAAGGCAAAGAGAAAGATCAAGAAAGGAGATGGGTCTTCTTCTTCTTCATCAATACCATCCATGCCAACGAAGG TTTGGCAACCCGGAGTTGACAACCTTGAAGAAGGTGAAGAACTTGAGTGTGACCCCACCGCTTACAATTCTCTTCACGCCTTTCACATTGGCTGGCCCTG CTTAAGTTTTGATGTTGTACGTGATTCACTTGGTTTGCTTCGGACTGATTTTCCACACTCTGTGTACTTTGTTGCTGGGACTCAGGCAGAGAATCCTGAT TGGAACTCAATTGGAATATTTAAAATATCTAATGTTTCTGGAAAAAGACGTGAATTGGTGCCCACTAAAGCTACAGCCGGTGACTCTGACATGGATGCAG ACAATAGTGATAATGATAGTGATAGTGATGAAGATAGTGAAGATGAAGAAGAGGGGGGATCTGCAGCACCAGTTTTGCAGTTGCGCAAGGTTGCTCATAG TGGATGTGTTAATCGTATTCGTGCAATGATACAAAATCCCCATATATGTGCTTCTTGGTCAGATGCTGGTTATGTACAGATATGGAACTTCAGCACTCAT CTGAATGCTTTGGCAGAGTCAGAAACAGAAGTTCCCCGGGGAGGTTCTTCAGTTTTTAATCAAGCTCCATTATTTAACTTCAAAGGGCATAAAGATGAAG GCTATGCTATAGATTGGAGTCCTCGTGTCACTGGAAGGCTGGTAACTGGTGATTGCAAGAGCTGTATTCACTTATGGGAGCCCACATCTGGTGCAACATG GAATGTTGATGCTACTCCATTTACTGGACATACTGCGAGCGTAGAAGATATACAATGGAGTCCTACAGAAGATCATGTGTTTGCCTCTTGTTCTGTGGAC GGGCATATTGCAATATGGGATGCGCGTCTGGGGAAGTCACCAGCTATTTCTTTCAAGGCACATAATGCAGATGTGAACGTGCTCTCATGGAACAGGCTGG CTAGTGTCATGTTGGCATCTGGAAGTGATGATGGAACATTTTCTATTCGTGATCTTAGATTGTTATCACCAAAATCGGAAGAGGATAAATCTTTAGTGGC ACATTTTGATTACCATAAACGCCCTATCACATCCATTGAGTGGAGTCCACATGAAGCCTCCACATTGGCAGTGTCATCATCTGACAATCAATTAACAATA TGGGATCTTTCTCTGGAAAAGGATGAGGAAGAGGAAGCAGAGTTCAAAGCTAAAACAAAAGAGCAAGTAAATGCCCCAGCAGATCTGCCCCCTCAACTTT TGTTTGTTCACCAGGGACAAAAAGACTTGAAAGAACTTCATTGGCATGCACAGATTTCGGGGATGATCGTGTCTACTGCCTCAGATGGCTTTAACATCTT GATGCCTTCAAACATACAGAGTACTCTTCCCTCTGAAGGTGCTTGA
AA sequence Show only first row Show all	>Potri.007G094000.1 pacid=42765467 polypeptide=Potri.007G094000.1.p locus=Potri.007G094000 ID=Potri.007G094000.1.v4.1 annot-version=v4.1 MVRSIKNPKKAKRKIKKGDGSSSSSSIPSMPTKVWQPGVDNLEEGEELECDPTAYNSLHAFHIGWPCLSFDVVRDSLGLLRTDFPHSVYFVAGTQAENPD WNSIGIFKISNVSGKRRELVPTKATAGDSDMDADNSDNDSDSDEDSEDEEEGGSAAPVLQLRKVAHSGCVNRIRAMIQNPHICASWSDAGYVQIWNFSTH LNALAESETEVPRGGSSVFNQAPLFNFKGHKDEGYAIDWSPRVTGRLVTGDCKSCIHLWEPTSGATWNVDATPFTGHTASVEDIQWSPTEDHVFASCSVD GHIAIWDARLGKSPAISFKAHNADVNVLSWNRLASVMLASGSDDGTFSIRDLRLLSPKSEEDKSLVAHFDYHKRPITSIEWSPHEASTLAVSSSDNQLTI WDLSLEKDEEEEAEFKAKTKEQVNAPADLPPQLLFVHQGQKDLKELHWHAQISGMIVSTASDGFNILMPSNIQSTLPSEGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19540			Transducin family protein / WD...		Potri.007G094000 [exp]	0	1
AT5G41190			unknown protein		Potri.003G124700 [exp]	3.46	0.8651
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G130600 [exp]	5.29	0.8078
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	5.65	0.8349
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	6.00	0.8225
AT2G19940			oxidoreductases, acting on the...		Potri.004G145700 [exp]	10.48	0.7667
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.017G120100 [exp]	13.78	0.7943
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	14.00	0.8152
AT5G07900			Mitochondrial transcription te...		Potri.003G190400 [exp]	14.49	0.7826
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Potri.017G099200 [exp]	15.16	0.7656
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.002G066100 [exp]	15.49	0.7804

Compare expression of checked genes

Potri.007G094000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.