Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34370 236 / 5e-75 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 225 / 1e-70 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G66730 104 / 1e-24 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G45260 103 / 3e-24 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G44160 103 / 4e-24 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT5G03150 102 / 6e-24 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT5G60470 101 / 9e-24 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G03840 102 / 1e-23 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT1G55110 101 / 1e-23 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G50700 101 / 1e-23 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217100 [exp] 244 / 8e-78 AT5G22890 316 / 2e-105 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.019G085400 [exp] 238 / 5e-74 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.013G114600 [exp] 233 / 2e-72 AT1G34370 495 / 3e-172 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.014G180600 [exp] 110 / 2e-26 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1) Potri.002G263600 [exp] 105 / 6e-25 AT3G50700 337 / 4e-111 indeterminate(ID)-domain 2 (.1) Potri.006G129300 [exp] 103 / 2e-24 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 103 / 3e-24 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 103 / 3e-24 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.003G036900 [exp] 103 / 3e-24 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023138 [exp] 311 / 1e-104 AT1G34370 236 / 4e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10009435 [exp] 237 / 4e-74 AT1G34370 506 / 4e-177 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10006071 [exp] 206 / 3e-62 AT1G34370 448 / 2e-154 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10011495 [exp] 114 / 4e-31 AT1G34370 97 / 6e-25 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10010820 [exp] 105 / 8e-26 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 107 / 3e-25 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10004497 [exp] 104 / 1e-24 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10019927 [exp] 103 / 3e-24 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 103 / 4e-24 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004840 [exp] 103 / 5e-24 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12874 [poplar] [flax] zf-met Zinc-finger of C2H2 type
Representative CDS sequence Show only first row Show all	>Potri.007G094100.1 pacid=42764836 polypeptide=Potri.007G094100.1.p locus=Potri.007G094100 ID=Potri.007G094100.1.v4.1 annot-version=v4.1 ATGTCAAATCCCGGCGAATCTACCCGAAATCCGACGGGATTTTCCGTCCCAATAAGTAACACAGACCCTCGAGTCCCACTCCTGAACCTCTCAGCTGTCC GTACGAGAATGGATTCACTTCAGCAATTCCTATCAGAATCAGTCAACAACAACACTTTAATCGGAAAGGATCAGATGGACATGGTCTCTTCCGAGATCTC CTCAGCCATACATGAAATCATTGTCAACGCTGCTGCTCTTCTCTCTTGTAACAGCAGTAGCTCACAACCCTTTACGCCTCAGCCGCCGGTGGATAGTACT GCAATAAAAAAGGCCCAAGTTTTGAAAGTAGAAAATAAAGAAGAGGACAGTGAAGTCGTAGAACTTGATGCGGTAGAATTGCTCGCCGAGCATGTTCATT TTTGTGAGATTTGCGGAAAAGGGTTTAAAAGAGATGCGAATTTGCGTATGCATATGCGTGCGCATGGGAATCAGTTCAAAACCCTTGAGGCACTAGCTAA GCCTGATAAGGGTAATGAAACGATATCAGCTTCCTTTGCGGGGAAGACAAAGTTTTCTTGCCCTTTTGAAGGTTGTAATAGGAATAAGAAACATGGTAAG TTCAAGCCATTGAAGTCGGTGATTTGTGTAAGAAATCATTTTAAGAGGAGTCATTGTCCGAAGATGTATTCTTGTAATCGGTGCAACAAGAAGAGTTTTT CGGTTGTTACGGATCTGAAGAGTCATTTGAAACATTGTGGGGAGTCGAGATGGAAGTGTTCTTGCGGGACAAGTTTTTCGAGGAAGGATAAGTTGTTTGG TCATATGGCTTTGTTTGAAGGACACATGCCTGCTGTTGCTGGTGAAGAGGAGGATAGTAAGGCCAAGGAGGTGGGAGTTGGCGGCGCGGTGGATATGGAG GAGGATGAAGAAGAAGAATCGGTTGTAAAGGGAGATAATTTGGGTGGGGATTGTAATGATAATGAGTTTTTTGAGGGATTGCTTGATGGGTTTTGTTCCA TGGAGGGGTATAGCTTGCAGGATGTATTGGGGTCTCCTTTTAGTGGAATCGAGGAGTTTTCTGGTCTCAGGCATTGA
AA sequence Show only first row Show all	>Potri.007G094100.1 pacid=42764836 polypeptide=Potri.007G094100.1.p locus=Potri.007G094100 ID=Potri.007G094100.1.v4.1 annot-version=v4.1 MSNPGESTRNPTGFSVPISNTDPRVPLLNLSAVRTRMDSLQQFLSESVNNNTLIGKDQMDMVSSEISSAIHEIIVNAAALLSCNSSSSQPFTPQPPVDST AIKKAQVLKVENKEEDSEVVELDAVELLAEHVHFCEICGKGFKRDANLRMHMRAHGNQFKTLEALAKPDKGNETISASFAGKTKFSCPFEGCNRNKKHGK FKPLKSVICVRNHFKRSHCPKMYSCNRCNKKSFSVVTDLKSHLKHCGESRWKCSCGTSFSRKDKLFGHMALFEGHMPAVAGEEEDSKAKEVGVGGAVDME EDEEEESVVKGDNLGGDCNDNEFFEGLLDGFCSMEGYSLQDVLGSPFSGIEEFSGLRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.007G094100 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	1.00	0.9408
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	1.73	0.9306
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.005G057800 [exp]	2.00	0.9322
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G022500 [exp]	2.64	0.9128	MYB173
AT1G34750			Protein phosphatase 2C family ...		Potri.005G164600 [exp]	4.24	0.9164
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	5.47	0.9180
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Potri.001G316300 [exp]	5.65	0.9020
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	6.32	0.9234
AT1G53050			Protein kinase superfamily pro...		Potri.013G130000 [exp]	6.32	0.9120
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	6.70	0.9084

Compare expression of checked genes

Potri.007G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.