Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10290 838 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65240 801 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT1G71830 565 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT5G63710 563 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G33430 543 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G16000 483 / 3e-164 NIK1 NSP-interacting kinase 1 (.1) AT2G13800 481 / 5e-164 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT3G25560 483 / 6e-164 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G34210 471 / 3e-159 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G60800 461 / 9e-156 NIK3 NSP-interacting kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074200 [exp] 965 / 0 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G306000 [exp] 596 / 0 AT5G63710 791 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G001800 [exp] 590 / 0 AT5G63710 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G083300 [exp] 562 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.003G023000 [exp] 549 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.001G206700 [exp] 544 / 0 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.004G108200 [exp] 500 / 8e-171 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.017G108000 [exp] 498 / 3e-170 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.010G134100 [exp] 494 / 1e-168 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000629 [exp] 909 / 0 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10023146 [exp] 666 / 0 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10020962 [exp] 550 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10030898 [exp] 490 / 6e-167 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 489 / 1e-166 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10006057 [exp] 485 / 7e-166 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10034413 [exp] 486 / 4e-165 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 485 / 7e-165 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034350 [exp] 484 / 1e-164 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10028716 [exp] 483 / 2e-164 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G094500.1 pacid=42764946 polypeptide=Potri.007G094500.1.p locus=Potri.007G094500 ID=Potri.007G094500.1.v4.1 annot-version=v4.1 ATGATGTCATTGAAGATGGAACTGGTTCTTGCAGCTTTAGTATTGGCTTACTTGCAGTCTTTTGTATTGTCCAACTTGCAAGGAGATGCCCTATCTGCAT TGAAGCTTTCGATGAATGTTCCAGACAATCAATTGAAAGATTGGAACCCAAATCAAGTTACTCCATGTACTTGGACGAATGTTATCTGTGACAGTAACGA ACATGTCATTTCTGTAACGCTGTCTGGCATCAACTGTTCTGGGACCTTGTCTCCTAAGATAGGAGTTCTAAAGACTCTTAATACACTAACATTGAAAGGG AATGGCATAACTGGTGGGATACCAAAAGAGTTTGGAAATTTGACAAGTTTAACCAGCTTAGATTTGGAAAATAATCGTTTAAGCGGTGAAATACCGTCTT CCTTGGGCAATCTTAAAAGGCTACAATTTTTGACATTGGGTCAAAATAATCTCAGTGGAGCTATCCCTGAATCACTTGCTGGTCTTCAAAACTTGATCAA CATTCTGCTCGATTCAAATAATCTCAGTGGTCAAATTCCAGATCATTTATTCCAAGTTCCTAAATACAATTTCACAGGAAACCACTTAAATTGTAGCGGG CCAAATTTGCATAGCTGCGAGTCTCATAATAGCGATTCAGGTGGTTCACATAAGTCAAAGACTGGAATTATAATTGGAGTTGTGGGAGGATTCACAGTTC TTTTTCTTTTTGGAGGCTTGCTATTTTTTGTTTGCAAGGGTAGACACAAAGGCTACAAACGTGAAGTATTTGTAGATGTTGCAGGTGAAGTGGATCAAAG AATAGCATTCGGTCAGTTAAAACGGTTTTCATGGAGGGAACTACAGCTTGCAACGGACAACTTCAGTGAAAAAAATATCCTTGGACAGGGAGGTTTTGGA AAAGTTTATAAGGGAGTGCTTGCTGATAATACCAAAATTGCGGTTAAGCGTTTAACTGATTTTGAAAGTCCTGGGGGTGATGCAGCATTCCAACGTGAAG TTGAGATGATAAGTGTAGCTGTTCACAGGAACCTATTACGTCTGATAGGGTTTTGCACAACAACTACAGAACGCCTCTTGGTGTATCCATTCATGCAGAA TTTAAGTGTGGCCTATTGTCTAAGAGAACGTAAACCCGAGGAGCCTGTTTTAGATTGGACAACCAGAAAAAGAGTGGCCTTAGGTGCAGCACGTGGGCTG GAATACCTTCATGAGCACTGCAATCCTAAAATTATTCATCGTGATGTGAAAGCAGCTAATGTACTACTGGACGAAGATTTTGAAGCAGTTGTTGGGGATT TTGGCCTTGCGAAGCTGGTGGATGTGAGAAAGACCAACGTGACAACTCAAGTTCGCGGGACAATGGGCCACATAGCACCAGAATACTTGTCCACTGGCAA GTCATCTGAAAGGACCGATGTCTTTGGGTATGGTATTATGCTTCTAGAGCTTGTTACAGGTCAACGGGCAATTGACTTTTCACGTCTGGAAGAAGAGGAT GATGTCTTATTGCTTGACCATGTCAAGAAGCTGGAGAGGGAGAAAAGACTGGATGCTATTGTCGACCGCAACCTAAATAAAAACTACAACATCCAGGAGG TGGAGATGATGATACAAGTCGCCTTGCTCTGTACCCAAGCATCACCAGAGAACCGTCCAGCAATGTCAGAGGTTGTGCGGATGCTGGAAGGAGAGGGGCT AGCTGAGAGGTGGGAAGAATGGCAGCATGTTGAAGTTACACGCATGCAAGAATACGAAAGATTGCAGAGACGATTTGACTGGGGAGAAGATTCGGTTTAT AACCAAGATGCTATTGAGTTATCTGGTGGAAGATGA
AA sequence Show only first row Show all	>Potri.007G094500.1 pacid=42764946 polypeptide=Potri.007G094500.1.p locus=Potri.007G094500 ID=Potri.007G094500.1.v4.1 annot-version=v4.1 MMSLKMELVLAALVLAYLQSFVLSNLQGDALSALKLSMNVPDNQLKDWNPNQVTPCTWTNVICDSNEHVISVTLSGINCSGTLSPKIGVLKTLNTLTLKG NGITGGIPKEFGNLTSLTSLDLENNRLSGEIPSSLGNLKRLQFLTLGQNNLSGAIPESLAGLQNLINILLDSNNLSGQIPDHLFQVPKYNFTGNHLNCSG PNLHSCESHNSDSGGSHKSKTGIIIGVVGGFTVLFLFGGLLFFVCKGRHKGYKREVFVDVAGEVDQRIAFGQLKRFSWRELQLATDNFSEKNILGQGGFG KVYKGVLADNTKIAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTTTERLLVYPFMQNLSVAYCLRERKPEEPVLDWTTRKRVALGAARGL EYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEED DVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQASPENRPAMSEVVRMLEGEGLAERWEEWQHVEVTRMQEYERLQRRFDWGEDSVY NQDAIELSGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10290			leucine-rich repeat transmembr...		Potri.007G094500 [exp]	0	1
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.013G059600 [exp]	1.73	0.8373
AT3G57400			unknown protein		Potri.016G056300 [exp]	4.89	0.7378
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	6.32	0.7740
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.001G122800 [exp]	11.83	0.7748
					Potri.010G144600 [exp]	12.24	0.8204
AT5G01015			unknown protein		Potri.016G143400 [exp]	12.48	0.7351
AT1G75400			RING/U-box superfamily protein...		Potri.005G231500 [exp]	14.62	0.6723
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Potri.006G146500 [exp]	14.69	0.7608	Pt-MEK1.1
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Potri.015G132600 [exp]	18.49	0.7429
AT4G38660			Pathogenesis-related thaumatin...		Potri.005G112600 [exp]	19.97	0.7885

Compare expression of checked genes

Potri.007G094500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.