Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 381 / 2e-133 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 310 / 3e-105 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 184 / 4e-56 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 180 / 2e-54 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 175 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 175 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 169 / 2e-50 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 153 / 4e-44 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 60 / 4e-10 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074066 [exp] 566 / 0 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 407 / 1e-143 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 400 / 9e-141 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 206 / 8e-65 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 195 / 6e-60 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 164 / 2e-48 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 161 / 2e-47 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 158 / 4e-46 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 154 / 1e-44 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023147 [exp] 463 / 1e-165 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 432 / 1e-153 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 330 / 3e-113 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 236 / 2e-77 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 212 / 1e-66 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 195 / 2e-60 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 184 / 4e-56 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 182 / 1e-54 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 148 / 6e-42 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 123 / 7e-33 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.007G094700.1 pacid=42766636 polypeptide=Potri.007G094700.1.p locus=Potri.007G094700 ID=Potri.007G094700.1.v4.1 annot-version=v4.1 ATGGCAAAGTGTTTTAGTTTTGCAGCAACACAAGATTCATGCTACCGTTACTCCTTCACTCGATCAGGCCTCAAATCATCCACAACCGACCTCGGCGAGG GCACGATCATGCATTGTTGGATCCCAAAGAAACACGACCCATCAAAACCTACGTTACTACTGATCCATGGTTTCGGTGCCAACGCAATGTGGCAATTCCA CGGTCTAATCCCTAAGTTCATCTCCAAATTCAACATCTACGTCCCCGATCTCCTATTCTTCGGGGAATCCTACACTGCACGAGCCGAAAGGTCCGAGGCA TTCCAGGCACAATGCGTTATTGGTGTCATGGAAGCTCATAAGGTGACCAAGATGGATGTGCTTGGGCTGAGTTATGGCGGGTTTGTTGCGTATAGTATCG CGGCACAGTTTAAAGCGCTCGTGGCGCGCGTGGCGATAGGATGCGCCGGAGTTTGTTTTGAAGAGAAGGATTTGGAGGAAGGAGGAGTGTTCAAGGAGGT GACAAGTATGGAGGAAGCTGTTGAGCTTTTGATACCACAGACACCCGAAAAAATTAGGGAGATGATGAGGTTGTCGTTTTATAAACAACCACGTAGCATG CCTTCATGTTTTCTCCAAGATTTTATTGAGGTAATGTGTACTCAATTCCGTCAAGAGAAGAAAGAACTAATCCAGGCATTACACAAGGACAGAAAGATGT CTGATCTTCCCAGGATAACTCAGCCTACACTCATAATCTGGGGAGAACATGACCAGGTTTTCCCACTGGAATTGGCACACAGACTAGAAAGGCATATCGG TGATAATGCCGAACTAGTGATAATAAAGAATGTGGGTCATGCACTCAATGCAGAGAGGCCCAAGGAGCTCTACAAGCACTTAAAGTCTTTCTTCATTGAC AATCTTCCTTCGTCAAAGCACGCAAGCCATACCAACAGCCTTAAGGCAGATTGA
AA sequence Show only first row Show all	>Potri.007G094700.1 pacid=42766636 polypeptide=Potri.007G094700.1.p locus=Potri.007G094700 ID=Potri.007G094700.1.v4.1 annot-version=v4.1 MAKCFSFAATQDSCYRYSFTRSGLKSSTTDLGEGTIMHCWIPKKHDPSKPTLLLIHGFGANAMWQFHGLIPKFISKFNIYVPDLLFFGESYTARAERSEA FQAQCVIGVMEAHKVTKMDVLGLSYGGFVAYSIAAQFKALVARVAIGCAGVCFEEKDLEEGGVFKEVTSMEEAVELLIPQTPEKIREMMRLSFYKQPRSM PSCFLQDFIEVMCTQFRQEKKELIQALHKDRKMSDLPRITQPTLIIWGEHDQVFPLELAHRLERHIGDNAELVIIKNVGHALNAERPKELYKHLKSFFID NLPSSKHASHTNSLKAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39955			alpha/beta-Hydrolases superfam...		Potri.007G094700 [exp]	0	1
AT2G21300			ATP binding microtubule motor ...		Potri.002G027600 [exp]	1.73	0.8413
					Potri.012G096050 [exp]	3.87	0.7536
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.008G164100 [exp]	9.59	0.7796
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G141400 [exp]	13.49	0.7006
AT4G34880			Amidase family protein (.1)		Potri.009G130700 [exp]	19.39	0.7073
					Potri.005G047550 [exp]	19.89	0.7028
					Potri.009G097500 [exp]	20.68	0.7266
AT3G26840			Esterase/lipase/thioesterase f...		Potri.017G062200 [exp]	23.81	0.7069
					Potri.005G135700 [exp]	40.12	0.6923
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.018G013500 [exp]	75.89	0.6677

Compare expression of checked genes

Potri.007G094700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.