Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) AT5G50290 76 / 1e-15 unknown protein AT3G17350 61 / 2e-10 unknown protein AT1G11915 55 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040500 [exp] 160 / 3e-47 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 145 / 3e-41 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 145 / 4e-41 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.015G078700 [exp] 79 / 2e-16 AT5G50290 387 / 4e-136 unknown protein Potri.008G099800 [exp] 72 / 3e-14 AT3G17350 332 / 2e-114 unknown protein Potri.010G152900 [exp] 68 / 6e-13 AT3G17350 339 / 4e-117 unknown protein Potri.004G007400 [exp] 64 / 2e-11 AT1G11915 360 / 1e-124 unknown protein Potri.011G007900 [exp] 63 / 4e-11 AT1G11915 379 / 6e-132 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036687 [exp] 156 / 1e-45 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 148 / 2e-42 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10037078 [exp] 145 / 1e-40 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036906 [exp] 117 / 3e-31 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037237 [exp] 76 / 4e-17 AT1G10380 125 / 3e-36 Putative membrane lipoprotein (.1) Lus10042105 [exp] 71 / 1e-13 AT5G50290 366 / 9e-128 unknown protein Lus10001236 [exp] 69 / 3e-13 AT5G50290 368 / 2e-128 unknown protein Lus10037236 [exp] 63 / 7e-12 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1) Lus10043098 [exp] 64 / 3e-11 AT3G17350 334 / 7e-115 unknown protein Lus10036702 [exp] 51 / 1e-07 AT1G10380 110 / 4e-30 Putative membrane lipoprotein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.007G094800.1 pacid=42766724 polypeptide=Potri.007G094800.1.p locus=Potri.007G094800 ID=Potri.007G094800.1.v4.1 annot-version=v4.1 ATGGAAAATCTTCCATCCTTCAACATCATCATCATCCTTCTCTTCTGTTATGTCACCCAATTCATACTATGGCAAACATTAGCCCAGGACCTACCATGCC GCACCACATGTGGCTCCATACAGGTCAAGTACCCCTTTGGCAGTGGCCACGGCTGCGGCTCCCCCAGGTTCCATCCTTACATAGCATGTTCACCTGAGGG AGACCAGCTCCTCCTCACAACTCACACAGGTTCTTATCCTATCACTTCCATATCCTACACCACCTCCACCTTTATCATCACCCCACCACACATGTCCACA TGCACCTCCATGCAACAATCCCCCAACTTAGGCCTAGATTGGGCAAGTCCATTCCAGCTTGGCTCATCAACTTTCCTTCTCCTCTCATGCACACCCCCAA CTTCATCTCTTAACATCAAGGGCTCACCTGTTTGTGACACCTCCTCTTATCTTTGTGCGTCGATTTACACTTGTCCATCTGTGATTGGCCTCGGCTTGCC TCTTTTTCCACCTACAAATACGTGTTGTGTGTATTCTCCTGCTAATTTTAATAGCAAAGGTGAGCTTGATCTCCAAAAGTTGAAGTGCATGGGGTATGCT TCAGTAGTGTCCCTTCAGGAACACCCTACCGACCCTTCCCAGTGGCAATATGGGGTGGAATTGAAGAGCAGAGGTGGAGCTTTGGATGATTATTACATAG ATAATAAATGCAATACTTGTGAGATTAGTGGTGGTGTATGTGGTTATGCTCCTCCTGTCAATTCCTTTGTGTGTGTGTGCAGTGATACAATCAATACCAC TATGGATTGCAATGCCCGCAGTCTGCAGAATCAACCTGAACTGACTTGGAACTCAGTTTCTTTACCCTCCAGGAAGCTGTGGATGGGGTTTCTGGGTGGT CTAGTTTTCGTTGGAGCAGCTTGA
AA sequence Show only first row Show all	>Potri.007G094800.1 pacid=42766724 polypeptide=Potri.007G094800.1.p locus=Potri.007G094800 ID=Potri.007G094800.1.v4.1 annot-version=v4.1 MENLPSFNIIIILLFCYVTQFILWQTLAQDLPCRTTCGSIQVKYPFGSGHGCGSPRFHPYIACSPEGDQLLLTTHTGSYPITSISYTTSTFIITPPHMST CTSMQQSPNLGLDWASPFQLGSSTFLLLSCTPPTSSLNIKGSPVCDTSSYLCASIYTCPSVIGLGLPLFPPTNTCCVYSPANFNSKGELDLQKLKCMGYA SVVSLQEHPTDPSQWQYGVELKSRGGALDDYYIDNKCNTCEISGGVCGYAPPVNSFVCVCSDTINTTMDCNARSLQNQPELTWNSVSLPSRKLWMGFLGG LVFVGAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10380			Putative membrane lipoprotein ...		Potri.007G094800 [exp]	0	1
AT5G04080			unknown protein		Potri.006G043300 [exp]	1.00	0.9397
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.008G055100 [exp]	2.00	0.9255
AT1G10380			Putative membrane lipoprotein ...		Potri.010G040500 [exp]	4.24	0.9090
AT3G12090		TET6	tetraspanin6 (.1)		Potri.010G220300 [exp]	4.58	0.9177
					Potri.011G165300 [exp]	5.29	0.9040
					Potri.008G020500 [exp]	5.83	0.8794
AT5G35090			unknown protein		Potri.018G114401 [exp]	6.24	0.8924
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.010G071850 [exp]	6.92	0.8816
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106500 [exp]	6.92	0.9016	Pt-RCOMT1.3
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.008G146400 [exp]	7.74	0.9160

Compare expression of checked genes

Potri.007G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.