Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 172 / 2e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G56500 82 / 4e-17 haloacid dehalogenase-like hydrolase family protein (.1) AT5G45170 63 / 5e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G38740 61 / 1e-10 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G25840 55 / 2e-08 GPP1 glycerol-3-phosphatase 1 (.1) AT4G21470 54 / 4e-08 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088500 [exp] 169 / 2e-50 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.013G007800 [exp] 73 / 5e-14 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G086900 [exp] 67 / 1e-12 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147300 [exp] 63 / 3e-11 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 59 / 6e-10 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G077200 [exp] 56 / 1e-08 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.001G147400 [exp] 52 / 1e-07 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.005G183400 [exp] 51 / 3e-07 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.001G104366 [exp] 47 / 1e-05 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000633 [exp] 456 / 3e-163 AT4G39970 427 / 1e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10023149 [exp] 453 / 5e-162 AT4G39970 423 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10013663 [exp] 173 / 1e-51 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 171 / 4e-51 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10020699 [exp] 72 / 1e-13 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10029840 [exp] 71 / 3e-13 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10003018 [exp] 61 / 3e-10 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018435 [exp] 59 / 1e-09 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018906 [exp] 57 / 7e-09 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10016820 [exp] 50 / 4e-08 AT3G48420 105 / 4e-29 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.007G095200.11 pacid=42765743 polypeptide=Potri.007G095200.11.p locus=Potri.007G095200 ID=Potri.007G095200.11.v4.1 annot-version=v4.1 ATGGCTTCTTCTCTGCTAATCTCTCACTCCAACTTCCTCTCTTTCTCTCAATCCCCTACTCTCTTCCCTTTCCACCTCAAAACTACCGCTATAAAACAAC GACAGCGACAACATTACTCTCCTCCTTCTCGTCACCTCAACATCGTCTCTTCTTCTGCCGCTTCAGCTTCTCTTGAAGCTCTAATATTTGACTGCGATGG AGTTATTTTAGAATCTGAACACCTCCATCGCCAAGCTTATAATGACGCTTTTGCTCACTTCAATGTTATCTGCTCTTCTTCTCTCCCTCTCAATTGGTCT CCCGATTTCTATGATGTGCTCCAGAATCGTATCGGTGGTGGCAAACCTAAGATGCGATGGTATTTTAAGGAGCATGGATGGCCGTCTTCCAACCTATTTG AGAAGCCACCGGAGGATGATGAGAGCCGTGCTAAGCTGATTGATACTCTTCAGGATTGGAAAACTGAAAGGTACAAAGAAATAATCAAATCTGGAACTGT GGAGCCCAGGCCTGGGGTTTTGAGGTTGATGGATGAGGCTAAGGCTGCTGGAAAAAAGCTGGCTGTTTGCTCTGCAGCAACTAAAAGTTCAGTTATACTC TGTCTTGAGAACCTTATAGGAATGGAGCGGTTTCAAGGCCTTGATTGCTTTCTTGCAGGTGATGATGTCAAGGAAAAGAAGCCAGATCCATCAATTTATG TGACAGCTTCCAAGATGCTTGGTGTGTCGGAGAGGGATTGTTTGGTGGTGGAGGATAGTGTCATTGGTCTACAGGCGGCAACAACAGCTGGAATGTCATG TGTTATCACTTACACCCCTTCAACAGCTGATCAGGATTTCAAAGATGCTATAGCAATTTACCCTGATTTGAGTAATGTGAGATTAAAAGACTTAGAGTTG TTGCTTCAAAATGTTGTTGCTGCCAGCTAG
AA sequence Show only first row Show all	>Potri.007G095200.11 pacid=42765743 polypeptide=Potri.007G095200.11.p locus=Potri.007G095200 ID=Potri.007G095200.11.v4.1 annot-version=v4.1 MASSLLISHSNFLSFSQSPTLFPFHLKTTAIKQRQRQHYSPPSRHLNIVSSSAASASLEALIFDCDGVILESEHLHRQAYNDAFAHFNVICSSSLPLNWS PDFYDVLQNRIGGGKPKMRWYFKEHGWPSSNLFEKPPEDDESRAKLIDTLQDWKTERYKEIIKSGTVEPRPGVLRLMDEAKAAGKKLAVCSAATKSSVIL CLENLIGMERFQGLDCFLAGDDVKEKKPDPSIYVTASKMLGVSERDCLVVEDSVIGLQAATTAGMSCVITYTPSTADQDFKDAIAIYPDLSNVRLKDLEL LLQNVVAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39970			Haloacid dehalogenase-like hyd...		Potri.007G095200 [exp]	0	1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.010G045100 [exp]	5.19	0.9635
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023012 [exp]	6.48	0.9494
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.008G077400 [exp]	7.61	0.9609
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Potri.009G080800 [exp]	7.74	0.9568
AT5G19500			Tryptophan/tyrosine permease (...		Potri.010G221900 [exp]	12.84	0.9157
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Potri.008G195100 [exp]	12.96	0.9484	Pt-AGPL2.1
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	13.26	0.9552
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.012G120492 [exp]	15.81	0.9468
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.002G053000 [exp]	17.83	0.9524
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.008G187400 [exp]	18.73	0.9479	Pt-AOAT1.2

Compare expression of checked genes

Potri.007G095200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.