Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39980 797 / 0 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) AT1G22410 769 / 0 Class-II DAHP synthetase family protein (.1) AT4G33510 748 / 0 DHS2 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073300 [exp] 913 / 0 AT4G39980 891 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.005G162800 [exp] 810 / 0 AT1G22410 869 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.002G099200 [exp] 806 / 0 AT1G22410 845 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.001G150500 [exp] 734 / 0 AT4G33510 819 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000636 [exp] 787 / 0 AT4G39980 860 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10023152 [exp] 787 / 0 AT4G39980 847 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10025739 [exp] 772 / 0 AT4G39980 848 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10035923 [exp] 766 / 0 AT1G22410 840 / 0.0 Class-II DAHP synthetase family protein (.1) Lus10001002 [exp] 718 / 0 AT4G33510 818 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Lus10011022 [exp] 599 / 0 AT4G33510 658 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01474 [poplar] [flax] DAHP_synth_2 Class-II DAHP synthetase family
Representative CDS sequence Show only first row Show all	>Potri.007G095700.2 pacid=42766509 polypeptide=Potri.007G095701.1.p locus=Potri.007G095700 ID=Potri.007G095700.2.v4.1 annot-version=v4.1 ATGGCTCTTTCAACTCTCTCATCAAAATCTCTCTACAGCAATGCCAACAACCTCCTTAAACAAAACCAACAACAACCACCCACTTTCTCTTTTGTCCCTG GAAACAAAACCCACATGTCAAAATCCCACCTTTCAATCTCTGCCGTAGCTGCCGAGCCCACCAAGAATTCAGTGGCAGTGAAGGAATATGCTGCCCCAGG GACTGGAAAATGGTCCTTGGAGAGTTGGAAAACGAAGAAAGCATTGCAGCTACCAGAATACCCTGATGCTAATGAGCTTCAGTCAGTTTTGAAGACTATC GAGGCGTTTCCTCCAATAGTTTTTGCTGGAGAAGCAAGGAGTTTAGAGGAGAGGCTTGCTGAGGCTGCAATGGGGAATGCTTTTTTGTTGCAAGGTGGTG ATTGTGCTGAGAGTTTCAAGGAGTTTAGTGCCATTAATATAAGGGATACTTTTAGAATTATGCTTCAGATGAGTGTTGTGCTAATGTTTGGAGGTCAAAT GCCTATCATTAAGGTGGGAAGAATGGCAGGTCAATTTGCAAAGCCAAGATCAGATCCATTTGAGGATAAGGATGGAGTGAAGCTGCCAAACCCACAGAGA TTGATAAGGGCTTATAACCAGTCTGCCGCAACTCTCAACCTTCTTAGGGCATTTGCCACTGGAGGGTATGCTGCAATGCAGAGAGTTACACAGTGGAATC TTGACTTCGCACAGCACAGCGAGCAGGGGGATAGGTACCAAGAACTAGCTCACCGGGTTGATGAGGCCTTGGGATTCATGGCTGCAGCAGGACTCACAGT GGATCACCCAATCATGACAACTACTGAATTTTGGACATCCCATGAGTGCTTGCACCTTCCTTATGAACAATCCCTCACAAGGCTTGATTCAACTTCTGGT CTCTATTATGACTGCTCTGCTCACATGCTTTGGTGTGGAGAGCGCACTCGCCAACTGGATGGTGCCCACGTGGAGTTCCTGAGAGGAATTTCCAACCCTA TTGGCATTAAGGTGAGCAACAAGATGGATCCAAATGAGCTAGTTAAACTCATTGAAATCTTGAATTCTAACAACAAGCCAGGAAGGATCTCAATCATCGT TAGAATGGGTGCTGAAAATATGAGAGTGAAGCTTCCCCACTTGATCAGAGCTGTCCGTAGAGCAGGACAAATTGTGACATGGATCTGTGATCCAATACAT GGAAACACCATCAAGGCACCTTGTGGACTCAAAACACGCCCCTTTGATGCTATTTTGGCTGAGGGGCGAGCATTCTTTGATGTGCATGAGCAAGAAGGAA GCCATCCTGGAGGAATTCATCTAGAGATGACTGGCCAGAATGTGACTGAATGCATTGGAGGGTCTCGGACAGTAACTTTTGATGACTTGAGCTCTCGATA TCACACTCATTGTGACCCAAGGCTCAATGCTTCTCAATCACTTGAGCTCGCTTTTATCATTGCTGAGCGACTCAGAAATAGAAGGGTAGGAACTCAACGT CTGCTTTCCTCGGGCCTGTAG
AA sequence Show only first row Show all	>Potri.007G095700.2 pacid=42766509 polypeptide=Potri.007G095701.1.p locus=Potri.007G095700 ID=Potri.007G095700.2.v4.1 annot-version=v4.1 MALSTLSSKSLYSNANNLLKQNQQQPPTFSFVPGNKTHMSKSHLSISAVAAEPTKNSVAVKEYAAPGTGKWSLESWKTKKALQLPEYPDANELQSVLKTI EAFPPIVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFSAINIRDTFRIMLQMSVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEDKDGVKLPNPQR LIRAYNQSAATLNLLRAFATGGYAAMQRVTQWNLDFAQHSEQGDRYQELAHRVDEALGFMAAAGLTVDHPIMTTTEFWTSHECLHLPYEQSLTRLDSTSG LYYDCSAHMLWCGERTRQLDGAHVEFLRGISNPIGIKVSNKMDPNELVKLIEILNSNNKPGRISIIVRMGAENMRVKLPHLIRAVRRAGQIVTWICDPIH GNTIKAPCGLKTRPFDAILAEGRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRNRRVGTQR LLSSGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Potri.007G095700 [exp]	0	1
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G135500 [exp]	5.47	0.8091
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Potri.001G092200 [exp]	19.84	0.8544
AT4G38380			MATE efflux family protein (.1...		Potri.005G102800 [exp]	20.49	0.8274
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	22.69	0.8095
AT1G75620			glyoxal oxidase-related protei...		Potri.002G027000 [exp]	28.87	0.7111
AT3G24240			Leucine-rich repeat receptor-l...		Potri.005G117700 [exp]	35.67	0.7911
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	47.62	0.7954
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.011G164700 [exp]	106.29	0.7126
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	146.57	0.7627
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Potri.004G135100 [exp]	147.51	0.7637

Compare expression of checked genes

Potri.007G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.