Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10350 284 / 4e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G65260 258 / 7e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G51120 194 / 3e-62 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT3G12640 51 / 2e-07 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G36660 48 / 3e-06 PAB7 poly(A) binding protein 7 (.1) AT2G35410 41 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073200 [exp] 337 / 5e-119 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.012G115100 [exp] 237 / 3e-79 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G110800 [exp] 231 / 3e-77 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.017G051600 [exp] 219 / 9e-73 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G311600 [exp] 204 / 1e-66 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G145050 [exp] 54 / 7e-09 AT2G24350 107 / 4e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G063800 [exp] 51 / 2e-07 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G269200 [exp] 50 / 3e-07 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G079800 [exp] 40 / 0.0007 AT2G24350 102 / 8e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043008 [exp] 208 / 4e-68 AT5G65260 278 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009323 [exp] 206 / 9e-68 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015840 [exp] 202 / 3e-66 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032509 [exp] 211 / 1e-64 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10032510 [exp] 198 / 3e-64 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037701 [exp] 56 / 4e-09 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015696 [exp] 52 / 8e-08 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014392 [exp] 45 / 3e-05 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 45 / 3e-05 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10025075 [exp] 42 / 0.0002 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.007G095800.1 pacid=42766108 polypeptide=Potri.007G095800.1.p locus=Potri.007G095800 ID=Potri.007G095800.1.v4.1 annot-version=v4.1 ATGGAGGAAGAAGAGCATGAGGTCTACGGTGGAGAGATTCCCGATGTGGAAGGCGATATGGACCCTCATAACGCCGACGTTGACATGTCCGCCGCCGAAG ATGATGCCGTCAAGGAGTTGGATGAGATGAAGAAGAGATTGAAGGAGATGGAAGAGGAAGCGGCTGCTCTTCGTGAGATGCAAGCAAAAGTTGAGAAGGA AATGGGCGCTGTTCCAGATCCCGCTAGTGCAGCAGCTAATCAAGCAAACAAAGAGGAAGCAGATTCTCGTTCTGTGTTTGTTGGCAATGTTGACTATGCA TGCACGCCTGAAGAAGTGCAGCAGCATTTTCAGTCCTGTGGTACGGTAAATAGGGTTACTATTTTGACAGATAAGTTTGGCCAGCCAAAGGGCTTTGCTT ATGTGGAATTCGTAGAAGTAGAAGCTGTTCAAGAGGCTCTGGCTCTCAACGAATCTGAACTACATGGCCGTCAATTGAAGGTTTCTCCCAAAAGGACCAA TGTTCCTGGAATGAAGCAATATCATCCTAGATCTTTCAATCCTTACATGGGTAACCGGTTCAGGAGGCCATATGCGCCCCCTTATTTCTACTCTCCTTAT GGATACGGGAAGGTGCCTAGATTCAGAAGGTCAATGCGATACATGCCTTATTACTAA
AA sequence Show only first row Show all	>Potri.007G095800.1 pacid=42766108 polypeptide=Potri.007G095800.1.p locus=Potri.007G095800 ID=Potri.007G095800.1.v4.1 annot-version=v4.1 MEEEEHEVYGGEIPDVEGDMDPHNADVDMSAAEDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVPDPASAAANQANKEEADSRSVFVGNVDYA CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALALNESELHGRQLKVSPKRTNVPGMKQYHPRSFNPYMGNRFRRPYAPPYFYSPY GYGKVPRFRRSMRYMPYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10350			RNA-binding (RRM/RBD/RNP motif...		Potri.007G095800 [exp]	0	1
AT4G16710			glycosyltransferase family pro...		Potri.013G025600 [exp]	6.63	0.8726
AT5G18540			unknown protein		Potri.008G216700 [exp]	16.73	0.8699
AT1G61770			Chaperone DnaJ-domain superfam...		Potri.004G022600 [exp]	18.33	0.8301
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.004G157800 [exp]	20.61	0.8669
AT4G39380			unknown protein		Potri.005G086800 [exp]	23.87	0.8344
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.001G152000 [exp]	25.39	0.8713
AT5G11600			unknown protein		Potri.018G043800 [exp]	27.45	0.8223
AT1G16170			unknown protein		Potri.001G038750 [exp]	34.08	0.8583
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	34.49	0.8563
					Potri.001G466500 [exp]	36.41	0.8658

Compare expression of checked genes

Potri.007G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.