Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22400 1013 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G40000 900 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55920 80 / 3e-15 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26600 79 / 9e-15 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G13180 74 / 2e-13 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT1G06560 51 / 3e-06 NOL1/NOP2/sun family protein (.1) AT5G26180 49 / 9e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G66180 46 / 7e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098850 [exp] 90 / 7e-21 AT2G22400 73 / 9e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G369600 [exp] 78 / 1e-14 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G368500 [exp] 67 / 4e-11 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.007G056800 [exp] 56 / 8e-08 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.006G224000 [exp] 54 / 3e-07 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G204900 [exp] 44 / 0.0004 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020217 [exp] 1152 / 0 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10026840 [exp] 1120 / 0 AT4G40000 954 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032368 [exp] 81 / 1e-15 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023095 [exp] 79 / 6e-15 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016622 [exp] 69 / 7e-12 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10028444 [exp] 57 / 3e-08 AT5G66180 534 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10041897 [exp] 53 / 9e-07 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10025004 [exp] 48 / 3e-05 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007337 [exp] 47 / 7e-05 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10022523 [exp] 46 / 7e-05 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01189 [poplar] [flax] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Potri.007G096100.2 pacid=42766708 polypeptide=Potri.007G096100.2.p locus=Potri.007G096100 ID=Potri.007G096100.2.v4.1 annot-version=v4.1 ATGGGAGGGAGAGGAAGAGGAAGCAGGTCACGAACTCAAAGAAAGCACTTTCGTGATGGCAGAGAGAATGTTTGGAAACGCCCCAAATCTGACAGTGCCT CGTCTGATCCCAACAGCAACAACAACTCTGAGAACAAGACTCATTGGCAGCCTTTTGCTACTCAAAACCCCGCCTTCGATGAATACTACAAGGAGCAAGG GATAGTGACAGCAGAAGAATGGGATACCTTTGTCGAAGTTCTTAGAACACCCTTGCCTGCTGCTTTTAGAATCAATTCAAGTAGCCAATTTTGTGAAGAT ATCAAATCACAGCTTGAGAATGACTTTATGAATTCTCTTAAAGCAGAGACCACTGATGGTGGTGAAGTGGAGGCTATTAGACCATTGCCTTGGTACCCTG ATAATCTTGCCTGGCATTCAAATTTTTCCCGGATGCAGCTAAGGAAGAACCAAACCCTTGAGAGGTTCCATGAGTTCTTAAAGCTAGAAAATGAAATTGG AAACATTACCAGACAGGAGGCTGTCAGCATGGTACCTCCACTCTTCCTTGATGTACGTCCGGATCATTTTGTATTTGATATGTGTGCTGCACCAGGTTCA AAAACATTTCAGTTGCTGGAGATTATATACCAATCAACAAAGTCAGGATCACTTCCTGATGGAATGGTTATGGCAAATGATCTGGATGTCCAGAGATGTA ATCTTCTCATCCATCAAACAAAAAGAATGTGCACTGCCAACTTGATAGTCACAAATAATGAAGCCCAACACTTCCCTGGGTGCCGTGCAGACAAAAATGG CTCTAAAGCTTCTGAAATGGAAATCGAGCCACAGATTAGTCAGCTTCTCTTTGATCGAGTGTTATGTGATGTTCCCTGTAGTGGAGATGGTACCCTCCGC AAGGCTCCAGATATGTGGAGGAAATGGAATCCAGGGATGGGCAATGGGCTCCATAGTCTACAAATTCAGATAGCGATGCGAGGCCTATCATTGCTCAAAG TTGGTGGAAGAATGGTGTACTCAACTTGCTCAATGAATCCAGTTGAGGATGAGGCTGTTGTTGCTGAGATTCTACGGAAATGTGGAGGGTCTGTTGAACT TGTTGACGTCTCCAGTGAACTTCCTCAACTTGTTCGTCGGCCTGGTGTCAGAAAATGGAAGGTACGTGACAAAGATCTCTGGTTAGCTTCCCACAAAGAC GTCTCCAAATTCCAGAGATACCATATACTTCCCAGCATGTTTCCTTCAGGCAAAAGCTATGTTGCCCCGGCCAACAAGGATCTTGAGCACGAGAATGGTG AAAATGCAATTTCTGAAGATGGGATTCAGCCAACAGAAGATGCTTCTACCGAAGATTTGATTGAGGAAGTTTCTGATCTCCCCCTGGAACGTTGTATGAG GATAGTGCCTCATGATCAGAACAGTGGGGCCTTTTTCATTGCTGTCCTCCAGAAACTCTCTCCTTTACCAGCCATTCAGGAGAAACCCTGTAAGAAAAGG AATTTGTTCAAAAAGAATCCTGAACTGCAAGGAAAATTATTGGATCAGGTTACTGAAGATAATAGTGGGCTGGAGCCAGACTCCAGAGATGTCGCAGTAG AAAAAATTTCTGAAGCAGCCACAGAGGCAGATTTAATTGTTGATGAGCCAGATGAAGCTGATATGGAACCTGATCCTTCTAATATATCTAACCAAGATTC AGAGGAAACCAAAGCACTGGTTAATGGGGAAACTGATTCTGGGAAGGCTGTGGGGAAGAGAAAGTTGCAACTTCAAGGCAAATGGAAAGGGGTTGACCCT GTTCTTTTCTTTAAAGATGAATCTATTATCAATAGCATAAAAATGTTCTATGGGATTGATGAGTCATTTCCTTTTGATGGCCACTTAATCTCAAGAAATA GTGATAAGAACCATGTGAAGAGAATTTACTATGTCTCAAAGTCAGTTAAGGATGTTCTTGGGTTGAATTTCCGTGTTGGTCAGCAACTTAAGATTGCTTC TATCGGCCTGAAGATGTTTGAGCGACAAACTTCAAGAGAAGGTACCTCTACCCCCTGTTCATTCAGGATATCATCAGAAGGATTGCCGGTGATTCTTCCA CACATCACTAATCAGATCCTATATGCATCCTCGGTAGATTTCAAGCATCTTTTGCAGTATAAAGCAATAAAGTTTGCTGACTTTGTTGATGCTGAGTTTG GCGAGAAGGCATCAAAGCTAATGATGGGTTGTTGTGTAATAGTCATGCGAGACAGCAAAACCATGTTGGATCCTACCAAGGTGGATGCGTCAACAATAGC CATTGGCTGCTGGAAGGGTAGATCCAATTTGAATGTGATGGTCACAGCAATTGACTGCCAAGAATTGCTAGAAAGGCTTTCGGTTCGCATGGAAGCCGAA AAAGGCTCTTCAGTGCAAGAAAACAAGATCAATGTTGATGACCTGCAGCTTAATGGAGCTAGCAAGGTTGAGGAATCTGAAACTACTCAGCTGGTTGCAG ATGCTTGA
AA sequence Show only first row Show all	>Potri.007G096100.2 pacid=42766708 polypeptide=Potri.007G096100.2.p locus=Potri.007G096100 ID=Potri.007G096100.2.v4.1 annot-version=v4.1 MGGRGRGSRSRTQRKHFRDGRENVWKRPKSDSASSDPNSNNNSENKTHWQPFATQNPAFDEYYKEQGIVTAEEWDTFVEVLRTPLPAAFRINSSSQFCED IKSQLENDFMNSLKAETTDGGEVEAIRPLPWYPDNLAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVRPDHFVFDMCAAPGS KTFQLLEIIYQSTKSGSLPDGMVMANDLDVQRCNLLIHQTKRMCTANLIVTNNEAQHFPGCRADKNGSKASEMEIEPQISQLLFDRVLCDVPCSGDGTLR KAPDMWRKWNPGMGNGLHSLQIQIAMRGLSLLKVGGRMVYSTCSMNPVEDEAVVAEILRKCGGSVELVDVSSELPQLVRRPGVRKWKVRDKDLWLASHKD VSKFQRYHILPSMFPSGKSYVAPANKDLEHENGENAISEDGIQPTEDASTEDLIEEVSDLPLERCMRIVPHDQNSGAFFIAVLQKLSPLPAIQEKPCKKR NLFKKNPELQGKLLDQVTEDNSGLEPDSRDVAVEKISEAATEADLIVDEPDEADMEPDPSNISNQDSEETKALVNGETDSGKAVGKRKLQLQGKWKGVDP VLFFKDESIINSIKMFYGIDESFPFDGHLISRNSDKNHVKRIYYVSKSVKDVLGLNFRVGQQLKIASIGLKMFERQTSREGTSTPCSFRISSEGLPVILP HITNQILYASSVDFKHLLQYKAIKFADFVDAEFGEKASKLMMGCCVIVMRDSKTMLDPTKVDASTIAIGCWKGRSNLNVMVTAIDCQELLERLSVRMEAE KGSSVQENKINVDDLQLNGASKVEESETTQLVADA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.007G096100 [exp]	0	1
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Potri.010G189500 [exp]	3.16	0.8205
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	4.00	0.8237
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Potri.009G049200 [exp]	4.24	0.8230
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	4.89	0.8219
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.008G120050 [exp]	9.32	0.7674
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Potri.003G010000 [exp]	9.94	0.7904
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.013G042300 [exp]	10.19	0.7882
AT5G15080			Protein kinase superfamily pro...		Potri.008G194700 [exp]	11.18	0.7699
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.017G120100 [exp]	11.66	0.7997
AT3G04480			endoribonucleases (.1)		Potri.019G019600 [exp]	12.36	0.7459

Compare expression of checked genes

Potri.007G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.