Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22420 521 / 0 Peroxidase superfamily protein (.1) AT5G19890 291 / 2e-97 Peroxidase superfamily protein (.1) AT4G36430 289 / 9e-97 Peroxidase superfamily protein (.1) AT4G16270 283 / 6e-94 Peroxidase superfamily protein (.1) AT2G18150 280 / 4e-93 Peroxidase superfamily protein (.1) AT5G06720 278 / 4e-92 ATPA2 peroxidase 2 (.1) AT5G66390 276 / 2e-91 Peroxidase superfamily protein (.1) AT2G38390 273 / 6e-90 Peroxidase superfamily protein (.1) AT2G18140 272 / 7e-90 Peroxidase superfamily protein (.1) AT1G44970 272 / 1e-89 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G072800 [exp] 610 / 0 AT2G22420 521 / 0.0 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 295 / 5e-99 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 289 / 1e-96 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011300 [exp] 285 / 5e-95 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G013000 [exp] 285 / 9e-95 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.013G083600 [exp] 282 / 6e-94 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 283 / 7e-94 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.002G031200 [exp] 282 / 8e-94 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.001G012901 [exp] 282 / 1e-93 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035925 [exp] 407 / 4e-143 AT2G22420 418 / 1e-147 Peroxidase superfamily protein (.1) Lus10008168 [exp] 288 / 5e-96 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10010634 [exp] 283 / 3e-94 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10027989 [exp] 283 / 5e-94 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10041784 [exp] 281 / 3e-93 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10004163 [exp] 276 / 1e-91 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10008173 [exp] 275 / 8e-91 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10027983 [exp] 274 / 3e-90 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10008174 [exp] 272 / 1e-89 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10008167 [exp] 273 / 2e-89 AT5G06720 399 / 3e-139 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.007G096200.1 pacid=42765332 polypeptide=Potri.007G096200.1.p locus=Potri.007G096200 ID=Potri.007G096200.1.v4.1 annot-version=v4.1 ATGTCCCCTCTCCTTGCAGCCTTTCTCTTGCTCGTATCCATGGGCTTGACCTCTGCCTCTACCGTGCCACTCCGGCCTGGCTTTTACTCCGAGACGTGCC CGGAAGCTGATTTCATAGTCAAGGATGTGATGAGGAGGAACATGATTAGAGAACCAAGAAGTGCTGCCTCAGTCATGCGTTTTCAATTCCATGATTGTTT TGTTAATGGTTGTGATGCTTCTGTGCTGCTTGATGACACACCAAACATGCTAGGAGAGAAGCTTGCTCTGTCCAACATAGATTCTTTAAGGTCTTATGAA GTTATTGATGAAGTTAAGGAAGAGTTAGAGAAGGTTTGTCCAGGGACGGTTTCTTGTGCAGATATAATTATCATGGCCTCTAGAGCTGCTGTTGTCCTGA GTGGAGGACCAGATTGGGACGTGAAGTTAGGGAGAGTAGACAGCTTAACAGCTAGCCAGGAGGACTCCAACAATATCATGCCAAGTCCAAGAGCTAATGC AAGCCTTCTCATGGACCTCTTCGAAAGATTCAACCTCTCTGTCAAGGATATGGTAGCCCTCTCAGGGTCACATTCTATTGGCCAAGCTCGGTGCTTCTCC ATAGTGTTCAGGCTCTATAACCAATCAGGCTCCGGCAGACCTGACCCAGCAATTGAGACAAAGTACAGAGAGAAGCTAGACAAGCTTTGTCCACTTGGTG GAGATGAAAATGTAACTGGAGACCTTGATGCAACACCAGCTACATTTGATAACAGATATTTCAAAGACTTGGTTGCTGGGAGAGGGTTTCTAAATTCTGA TCAGACCCTTTACACATTTCCTGAAACGAGGAAATACGTAACCCTTTTTAGCAAAAATCAACAGGCATTTTTCAGGGCCTTTGTCGAGGGCATGATAAAG ATGGGCGACCTGCAGTCTGGGCGGCCTGGAGAGATTAGAAGCAATTGTAGGATGGCCAACAGCCGGCCTGTTCGTGTACTCACGGAGTCTTAA
AA sequence Show only first row Show all	>Potri.007G096200.1 pacid=42765332 polypeptide=Potri.007G096200.1.p locus=Potri.007G096200 ID=Potri.007G096200.1.v4.1 annot-version=v4.1 MSPLLAAFLLLVSMGLTSASTVPLRPGFYSETCPEADFIVKDVMRRNMIREPRSAASVMRFQFHDCFVNGCDASVLLDDTPNMLGEKLALSNIDSLRSYE VIDEVKEELEKVCPGTVSCADIIIMASRAAVVLSGGPDWDVKLGRVDSLTASQEDSNNIMPSPRANASLLMDLFERFNLSVKDMVALSGSHSIGQARCFS IVFRLYNQSGSGRPDPAIETKYREKLDKLCPLGGDENVTGDLDATPATFDNRYFKDLVAGRGFLNSDQTLYTFPETRKYVTLFSKNQQAFFRAFVEGMIK MGDLQSGRPGEIRSNCRMANSRPVRVLTES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22420			Peroxidase superfamily protein...		Potri.007G096200 [exp]	0	1
AT2G15830			unknown protein		Potri.009G107050 [exp]	3.46	0.8529
					Potri.005G053150 [exp]	3.46	0.8491
AT5G36930			Disease resistance protein (TI...		Potri.006G283000 [exp]	3.74	0.8160
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.016G110100 [exp]	7.68	0.8737	UCP2.3
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Potri.006G036400 [exp]	9.48	0.8062
AT2G02400			NAD(P)-binding Rossmann-fold s...		Potri.004G230900 [exp]	9.59	0.7899
					Potri.007G092450 [exp]	11.18	0.7580
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.011G148400 [exp]	11.40	0.8163
AT3G19550			unknown protein		Potri.009G091100 [exp]	12.00	0.8163
AT5G19930			Protein of unknown function DU...		Potri.018G073000 [exp]	19.07	0.7760

Compare expression of checked genes

Potri.007G096200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.