Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10360 417 / 2e-149 RPS6B, EMB3010 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) AT4G31700 397 / 7e-142 RPS6A, RPS6 ribosomal protein S6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G072700 [exp] 455 / 1e-164 AT5G10360 416 / 2e-149 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.001G311000 [exp] 452 / 2e-163 AT5G10360 421 / 3e-151 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.005G162600 [exp] 446 / 3e-161 AT5G10360 419 / 1e-150 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.002G099500 [exp] 441 / 3e-159 AT5G10360 413 / 6e-148 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007376 [exp] 430 / 1e-154 AT5G10360 451 / 3e-163 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10031021 [exp] 427 / 2e-153 AT5G10360 448 / 4e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10027260 [exp] 426 / 4e-153 AT5G10360 448 / 8e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10035414 [exp] 423 / 4e-151 AT5G10360 446 / 5e-160 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10020794 [exp] 430 / 9e-146 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01092 [poplar] [flax] Ribosomal_S6e Ribosomal protein S6e
Representative CDS sequence Show only first row Show all	>Potri.007G096300.1 pacid=42765201 polypeptide=Potri.007G096300.1.p locus=Potri.007G096300 ID=Potri.007G096300.1.v4.1 annot-version=v4.1 ATGAAGTTTAACATTGCAAATCCGACTACTGGGTGCCAGAAGAAGCTTGAAATCGATGATGATCAGAAACTCCGAGCGTTCTTTGACAAGAGGATCTCAC AAGAAGTCAGTGGAGATGCACTGGGCGAGGAATTCAATGGTTATGTTTTTAAGATTATGGGAGGGTGTGACAAGCAGGGTTTCCCAATGAAGCAAGGAGT TCTAACTCCAGGCCGTGTTCGTCTCTTGCTGCACAGAGGTACTCCTTGCTTCCGTGGATACGGCAGGAGAAATGGAGAGCGCAGGAGGAAGTCTGTTCGT GGATGCATTGTTAGTCAAGATCTCTCTGTTTTGAACCTGGTCATCGTGAAGAAGGGAGAGAATGATCTTCCTGGCCTGACAGATGTTGAGAAGCCAAGGA TGAGAGGTCCAAAGAGGGCATCAAAGATCAGGAAACTGTTTAACCTCTCTAAGGAGGATGATGTCCGGAAGTATGTCAACACTTACCGCAGAACATTTAC AACCAAATCTGGTAAGAAGGTTAGCAAGGCTCCCAAAATTCAAAGGTTGGTTACTCCCTTGACTTTGCAAAGGAAGCGTGCAAGAATATCTGACAAGAAG AAGAGAATCACAAAGGCCAAGGCTGAGGCAGCAGAGTATCAGAAGCTTCTTGCCACCAGGTTGAAGGAGCAGCGTGAACGCCGCAGTGAGAGCTTGGCAA AGAAGAGATCTAGATTATCTGTTGCCTCAAAGCCCTCAGTTGTGGCTTAA
AA sequence Show only first row Show all	>Potri.007G096300.1 pacid=42765201 polypeptide=Potri.007G096300.1.p locus=Potri.007G096300 ID=Potri.007G096300.1.v4.1 annot-version=v4.1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFNGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVR GCIVSQDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISDKK KRITKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLSVASKPSVVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.007G096300 [exp]	0	1
AT4G34670			Ribosomal protein S3Ae (.1)		Potri.005G051200 [exp]	3.46	0.9467
AT4G34555			Ribosomal protein S25 family p...		Potri.008G020000 [exp]	3.87	0.9496
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Potri.005G194500 [exp]	4.89	0.9571	ARP1.1
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G072700 [exp]	5.65	0.9547
AT4G27090			Ribosomal protein L14 (.1)		Potri.008G168600 [exp]	8.94	0.9474
AT3G60770			Ribosomal protein S13/S15 (.1)		Potri.014G068600 [exp]	10.95	0.9444	RPS13.1
AT5G28060			Ribosomal protein S24e family ...		Potri.008G152500 [exp]	15.87	0.9447
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.015G094400 [exp]	16.24	0.9493	RPL17.2
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454000 [exp]	17.88	0.9407
AT2G41840			Ribosomal protein S5 family pr...		Potri.016G055000 [exp]	19.44	0.9337	Pt-RPS2.3

Compare expression of checked genes

Potri.007G096300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.