Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65280 553 / 0 GCL1 GCR2-like 1 (.1) AT1G52920 336 / 1e-112 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) AT2G20770 316 / 7e-105 GCL2 GCR2-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G072500 [exp] 718 / 0 AT5G65280 586 / 0.0 GCR2-like 1 (.1) Potri.001G403200 [exp] 355 / 7e-120 AT1G52920 601 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Potri.013G134700 [exp] 317 / 5e-105 AT2G20770 605 / 0.0 GCR2-like 2 (.1) Potri.011G122300 [exp] 97 / 2e-23 AT1G52920 171 / 7e-52 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025736 [exp] 550 / 0 AT5G65280 545 / 0.0 GCR2-like 1 (.1) Lus10035926 [exp] 550 / 0 AT5G65280 547 / 0.0 GCR2-like 1 (.1) Lus10020719 [exp] 339 / 8e-114 AT1G52920 578 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Lus10033701 [exp] 322 / 1e-106 AT2G20770 587 / 0.0 GCR2-like 2 (.1) Lus10031638 [exp] 143 / 4e-38 AT2G20770 238 / 3e-76 GCR2-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF05147 [poplar] [flax] LANC_like Lanthionine synthetase C-like protein
Representative CDS sequence Show only first row Show all	>Potri.007G096500.1 pacid=42764996 polypeptide=Potri.007G096500.1.p locus=Potri.007G096500 ID=Potri.007G096500.1.v4.1 annot-version=v4.1 ATGTCATCTGCGGTGGAGGCAACTTCCCAAGAGAACCATGAGGAGAGCAGCAACGAACGGCTAGATTTGATTCACCATCTAGATCCAACAGCTACAGATA TGTTAATCCCTAATGAAGTTCTTCTCAAAGCTGCCATTTCTCTCAAGGATCAGGTGGTGGAGGCGACGTGGAAAAGAGATAGCAATATGGGTGCGGGTAT TGACCCGACAGTGTATACGGGTCTTCTGGGGACAGCTTTCACCTGCTTGCGGTCGTTCGAGGTTACCGGTAATGAGCAGGACTTGCTATTGTGCTCCAAC ATTGTTGACACGTGCTCCGTTTCCGCACATGCCTCCTCTAGGCAAATGACCTTGACCTTCTTATGTGGGAAAGGAGGATTATATGCCCTTGGAGCCGTGG CCGCTAACTACAAGGGGGACCATCAAGGACGTGACTTCTTTTTGAATCTCTTCCTTGAGGTAGCACAAGAGAGAGCCCTCCCAGTTGGACCTGAGGAGGG TGGTTTTGGGATGTCATACGAGCTTATGTATGGGAGAGCTGGGTTTTTATGGGCTGCTTTATTCATAAACAAGCATCTTGGCGAAGGGACGTTACCTAGT GATCTTCTTTTGCCTGTTGTTGACGCTGTTTTAGCTGGGGGCAGAGCAGGGGCATCTGACAATGCAGCCTGTCCACTGATGTACAGATGGCATGGCACAC GGTACTGGGGTGCAGCCAATGGCCTTGCTGGAATCTTGCAAGTGCTACTTAACTTTCCTCTTTCCAAAGAGGATGCCGAGGATGTTAAGGCAACTTTAAG GTACATGATGAGCAACCGGTTCCGTCATAGCGGAAATTACCCTTCAAGCGAAGGAAACCCGAGGGACAAATTGGTGCAATGGTCACATGGTGCAACTGGC ATGGTCATCACCCTCTGCAAGGCATCTGAGATGTTTCCAAATGATAGGGAGTTCAGAGATGCTGCTATAGAAGCAGGGGAAGTTGTTTGGAAGAGTGGGC TAGTGAAGAAGGCAGGCCTTGCCGATGGTGTGGCAGGAAACGCTTATGCCTTCCTTTCCCTTTATCGCCTTACTGGAGAGAGCATATATGAGGAGAGAGC AAAGGCATTTGCAAGCTTCTTATATCATAATGCTAGTGGACTCGTGACCATAGGTCATGCTCGTGGAGCTGATCATGCCTATTCTCTTTTTCAAGGACTA GCTGGAACAGCTTGCCTTTGGTTTGATCTTCTCAAGCCTGAAAGTTCCAGATTCCCTGGGTATGAACTATAA
AA sequence Show only first row Show all	>Potri.007G096500.1 pacid=42764996 polypeptide=Potri.007G096500.1.p locus=Potri.007G096500 ID=Potri.007G096500.1.v4.1 annot-version=v4.1 MSSAVEATSQENHEESSNERLDLIHHLDPTATDMLIPNEVLLKAAISLKDQVVEATWKRDSNMGAGIDPTVYTGLLGTAFTCLRSFEVTGNEQDLLLCSN IVDTCSVSAHASSRQMTLTFLCGKGGLYALGAVAANYKGDHQGRDFFLNLFLEVAQERALPVGPEEGGFGMSYELMYGRAGFLWAALFINKHLGEGTLPS DLLLPVVDAVLAGGRAGASDNAACPLMYRWHGTRYWGAANGLAGILQVLLNFPLSKEDAEDVKATLRYMMSNRFRHSGNYPSSEGNPRDKLVQWSHGATG MVITLCKASEMFPNDREFRDAAIEAGEVVWKSGLVKKAGLADGVAGNAYAFLSLYRLTGESIYEERAKAFASFLYHNASGLVTIGHARGADHAYSLFQGL AGTACLWFDLLKPESSRFPGYEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.007G096500 [exp]	0	1
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	2.44	0.9403
					Potri.001G371850 [exp]	2.82	0.9329
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Potri.002G176900 [exp]	6.00	0.9045
AT5G49620	MYB	ATMYB78	myb domain protein 78 (.1.2)		Potri.014G117000 [exp]	8.83	0.9151	Pt-MYB.47
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004900 [exp]	8.94	0.9107
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.005G224100 [exp]	9.59	0.9208
AT4G37640		ACA2	calcium ATPase 2 (.1)		Potri.007G055500 [exp]	10.48	0.9187	Pt-ACA2.1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G113100 [exp]	12.72	0.8841
AT5G36930			Disease resistance protein (TI...		Potri.019G019053 [exp]	13.49	0.8935
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.001G219100 [exp]	14.24	0.9110

Compare expression of checked genes

Potri.007G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.