Plant FIBer expression Database

Potri.007G096800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G40050 749 / 0 Protein of unknown function (DUF3550/UPF0682) (.1)
AT3G03570 491 / 1e-167 Protein of unknown function (DUF3550/UPF0682) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G072200
[exp]
1025 / 0 AT4G40050 753 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Potri.013G073200
[exp]
540 / 0 AT3G03570 794 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023156
[exp]
821 / 0 AT4G40050 752 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10012756
[exp]
659 / 0 AT4G40050 620 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10020328
[exp]
497 / 7e-170 AT3G03570 771 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10005664
[exp]
491 / 2e-167 AT3G03570 769 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12070 SCAI Protein SCAI
Representative CDS sequence
>Potri.007G096800.1 pacid=42766782 polypeptide=Potri.007G096800.1.p locus=Potri.007G096800 ID=Potri.007G096800.1.v4.1 annot-version=v4.1
ATGGCGAAGAAAGAAAACGACGTCGTCTCACAAACCTTCCGCGCCTTGGTAGAAAGCGCAGACCGGAAATTCGGCCGAGTCCGTGACCTACCATTGTACG
GACGCGCACCGCAGAACCACTACTTCCAGAAAGTATTCAAGGCGTATATGAGGTTATGGAAGTACCAGCAGGAGAACCGGTCAAAGCTAGTTGACTCCGG
CTTGAACCGTTGGGAAATTGGAGAGATCGCGAGTCGGATCGGGCAGTTGTATTTTAATCAGTATATGAGGAGTAGCGAAGCTAGGTTTTTGGTGGAAGCG
TATGTGTTTTATGAGGCGATTTTGGAGCGGAAGTATTTTGATGCCCGCGGAAGTGGTAAACCGAAGGTTGATGTTGGTGTTAGGTTTAAGGAGTTGAGAT
TTTATGCTCGGTTTTTGCTTGTTGCTTTGATTTTCAACAAGGTTGATATGGTGAGATTGCTCGCTGAGAGGTTTAAAGGTCTTGTTGATGATAGCATGAC
AAAGTTTCGTGAAACAAACTTCAAAGAATGGAAGCTAGTGGTGCAAGAAATTTTCCGCTTTATGGAAGTTGGTACTGCCTTCACAAATGTCAGGCCTTTG
CGGTACTGTGCTCTGTTTGATTCCCATCCAGCTTCTCGTCCTTATTTGGCTCGTTTCCATGCGAGGAAGATTGTAAAATTTAGAGATGCGCTCTTGACAA
GTTATCATAGAAACGAAGTAAAATTTGCAGAACTTACTTTAGACACATACAGGATGATGCAATGTTTAGAATGGGAACCTAGTGGATCTTTCTACCAGAA
GCGTCCTGTTGAATCAGTTTACCAAAAGCATCCAGTGGAATCTAATGAAAATGGCACTGTAATTGATCATTCTGGAGCTGCTTCTGGATTGATAGATATA
AACTTGGCTGCAGATTTGACCGATCCAACTTTACCACCAAATCCCAGGAAAGCTGTTCTTTATCGTCCGTCGGTGACCCATTTGCTAGCAGTTATGGCAA
CAATTTGCGAAGAGCTCCCTCCAGAGACCATTGTGCTAATATATCTATCAGCCTCAGGGAAGGCTGCTCATAGTAATCTTTCTCAGTCAGGAAGCTCTGG
GGGATCAAGGAAATCTTCCAAAGACAAGGTTGTCTCTGGAGTATATGGCGAAGATAAAAGCTCTGCACCTGAATCTCATTGTAATGGCAAGAGAGAGTCA
AGTGACTACTACGACAATTATCTCTGGTTAGGTCCCCGGGGATATGGTGGGTCAAATGCCCTTTACCCTGGCGATATAATTCCTTTTACTCGAAGACCTC
TTTTCTTGATTATTGATAGTGACAGCAGCCATGCATTCAAGGTCCTGCATGGTGCAGAAAGGGGAGAGCCAGCTGCCTTGCTTCTTTCACCTTTGAAACC
AGCATTCAAGAACCTATCTGCTGTTGATACATCACATTGTGGAAGTCAGTTTACTTTTTTCTTGACTGCTCCTTTGCAGGCATTCTGCCAGATGGTTGGC
CTCACTTCTGCTGATTCTGATATGGATTTTTACAATGATGCTGAGGAGATACTCTCCATTGCATTCTCTGAGTGGGAGGTTATTATTTGTACATCAAAAG
GCCTGGATCTGGTTTGGGCACAAGTTTTATCCGATCCCTTTCTAAGGAGGCTTATTCTTAGATTCATATTCTGCAGATCTGTGCTCTCTGTCTTCTGCCC
TCTTGAAGATGAGCAATATCTACCCATTTGCCTGCCCCATCTTCCCAATTCTGTCTCCGCGAGATCTGAAGTTGTGCAGTCAGCTGTATTTCGGCTTGCA
AATCACCTGAAGGTTGCAGATTGTTTTCAATTTGATGACAGATAA
AA sequence
>Potri.007G096800.1 pacid=42766782 polypeptide=Potri.007G096800.1.p locus=Potri.007G096800 ID=Potri.007G096800.1.v4.1 annot-version=v4.1
MAKKENDVVSQTFRALVESADRKFGRVRDLPLYGRAPQNHYFQKVFKAYMRLWKYQQENRSKLVDSGLNRWEIGEIASRIGQLYFNQYMRSSEARFLVEA
YVFYEAILERKYFDARGSGKPKVDVGVRFKELRFYARFLLVALIFNKVDMVRLLAERFKGLVDDSMTKFRETNFKEWKLVVQEIFRFMEVGTAFTNVRPL
RYCALFDSHPASRPYLARFHARKIVKFRDALLTSYHRNEVKFAELTLDTYRMMQCLEWEPSGSFYQKRPVESVYQKHPVESNENGTVIDHSGAASGLIDI
NLAADLTDPTLPPNPRKAVLYRPSVTHLLAVMATICEELPPETIVLIYLSASGKAAHSNLSQSGSSGGSRKSSKDKVVSGVYGEDKSSAPESHCNGKRES
SDYYDNYLWLGPRGYGGSNALYPGDIIPFTRRPLFLIIDSDSSHAFKVLHGAERGEPAALLLSPLKPAFKNLSAVDTSHCGSQFTFFLTAPLQAFCQMVG
LTSADSDMDFYNDAEEILSIAFSEWEVIICTSKGLDLVWAQVLSDPFLRRLILRFIFCRSVLSVFCPLEDEQYLPICLPHLPNSVSARSEVVQSAVFRLA
NHLKVADCFQFDDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G40050 Protein of unknown function (D... Potri.007G096800
[exp]
0 1
AT2G36840 ACR10 ACT domain repeats 10, ACT-lik... Potri.011G154600
[exp]
1.41 0.8309
AT3G23410 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXID... Potri.008G169300
[exp]
1.73 0.8131
AT5G12300 Calcium-dependent lipid-bindin... Potri.009G070400
[exp]
3.00 0.8346
AT1G08230 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRAN... Potri.009G149900
[exp]
5.47 0.8065
AT2G24130 Leucine-rich receptor-like pro... Potri.003G184100
[exp]
5.65 0.8087
AT1G03055 unknown protein Potri.005G216400
[exp]
8.36 0.7978
AT4G27290 S-locus lectin protein kinase ... Potri.011G126001
[exp]
8.94 0.7910
AT3G19540 Protein of unknown function (D... Potri.009G092400
[exp]
8.94 0.7883
AT4G11820 FKP1, EMB2778, ... FLAKY POLLEN 1, hydroxymethylg... Potri.001G111700
[exp]
10.39 0.8047
AT1G52080 AR791 actin binding protein family (... Potri.001G191300
[exp]
13.26 0.7755

Potri.007G096800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.