Plant FIBer expression Database

Potri.007G096900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65290 985 / 0 LMBR1-like membrane protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G072100
[exp]
1256 / 0 AT5G65290 924 / 0.0 LMBR1-like membrane protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025735
[exp]
1119 / 0 AT5G65290 1004 / 0.0 LMBR1-like membrane protein (.1.2)
Lus10035927
[exp]
1117 / 0 AT5G65290 1001 / 0.0 LMBR1-like membrane protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04791 LMBR1 LMBR1-like membrane protein
Representative CDS sequence
>Potri.007G096900.1 pacid=42764898 polypeptide=Potri.007G096900.1.p locus=Potri.007G096900 ID=Potri.007G096900.1.v4.1 annot-version=v4.1
ATGTGGGTGTTTTATTTGATCTCGTTACCTCTAACCCTAGGCATGGTGATTTTAACAGCCAGATACTTCGCTGGACCCGAGGTTCCTCGTTATGTCTTCT
TCACCGTTGGATACACCTGGTTTTGTTCTCTCGCCATCATCACCCTCGTCCCTGCCGATATCTACACGACTAAATTTGATCTTGATCGCGGAGGCATTTC
TTTCTATTGGATTTGGTCGTATTGGAGTACATTTTTACTTACCTGGGCTGTGGTGCCCCTTATTCAGGGTTTTGAAGATGCAGGAGACTTCACCGTTGTA
GAAAGATTAAAGACTAGTGTACGCGCGAACTTAGTCTTCTATTTAATTGTGGGAGCCATTGGCCTCTTTGGAATTATACTTCTCATCATCATGCACAAGA
TAAGGATCGGAAATGTGCTTGCTTTTGCCATGGCTTGCTCAAATACTTTTGGACTTGTTACCGGTGCATTTCTTCTTGGTTTTGGTTTGAGTGAAATTCC
CAAGGGCCTATGGAGAAATTCAGATTGGTCCACCCGCCAAAAAGTACTTTCTCATAAAATTGCCAAAATGGCTGTGAGACTTGACGATGCTCATCAAGAT
CTTTCAAATGCTATTGTAGTTGCTCAAGCAACATCCAATCAGATGTCCAAGCGTGACCCTTTGAGACCCTACATGGATGTTATTGATAATATGCTAGCAC
AAATGTTTAAGCAAGACCCATCCTTTAAACCGCAAGGTGGTCGGTTGGGAGAAAATGATATGGACTATGACACAGATGTGAGATCAATGGCAACACTCAG
ACGTCATCTTCGAGGAGCTCGGGAAGAGTATTATCGTTGTAGAAGTGAGTATATGACCTATGTCATGGAAGCGCTTGAACTGGAAGACACTGTTAAAAAC
TATGAACGAGGCAGTTCAACTGGATGGCAATATATTTCAAGCTTCAAGCCTGCTCGCACTGGGAAGTTGGGTGCTTCCTTTGATACAATGGAATTTTTGT
GGCGATGCATCTTAAGAAAGCAACTTAAAAAGGTGTTGGCGGTCATACTGTGTACCATGTCAGCTGCAATTCTTTTAGCAGAGGCAACTCTACTAATTGG
TGGAGTTGATCTCTCTCTATTTTCAATCCTTATAAACTCTGTAGGAAAACAAGAGTTATCCATGCAGGTTTTGGCTTTTGTACCTTTGATGTATATGTGC
ATCTGCACATACTATTCTTTGTTCAAAATTGGAATGTTAATGTTTTACTCATTAACACCCAGGCGGACAAGTTCAGTCAGCTTGCTTATGATATGCTCGA
TGGTTGCTCGATATGCTCCTCCAATTTCATACAACTTTCTCAACCTCATCAATCTTGATTCTAAGGAAACTATATTTGAAAAGCGAATGGGGAAAATCGA
CAAAGCCGTCCCTTTCTTTGGAAATGATTTTAACAGAATCTATCCACTTATTATGGTTATATACACCCTGTTGGTTGCAAGCAATTTCTTTGATCGAGTA
ATTGGTTTCTTTGGAAGCTTGAAGAGATTTCGGTTTCAAACCGAGGCAGATGATACTGATGGATTTGATCCTTCGGGATTAATTATCCTACAAAAAGAAC
GATCTTGGTTGGAACAAGGACTAAAAGTTGGTGAGCATGTTGTGCCACTGGCAAGAAACTTTAACGGTGTGGATATGGAGTCTGGAAGCAATAGTATCGA
AAGGACTGCTGTTGAAATGAAGGCAACAAGCAGTTTAGGCATTGAGGACAGAAAGGGAAGCCAATCCAAATCCTTGAAAGAAGAAAGTCAGAGATATGGC
ACAAGCAGAGAAGCCGTCAGTAACAAGTATGCTGCCTTTAGAGAACAGAACAGACAAGCCAATATGAGGCTGGTGGAGAAGAACGTTGCCGCTGCAAAAG
TGTCATTGCTTGATGATGAGGATTCTCACTCCAACAATACAACAGCTGGACCACCAGCTGGTTTGGCCTCAAAATGGGAATCAATGAAGAATGGTTTTCA
GAGTTTTAAAGCAAACATAGGAGCCAAAAAATTTCTTCCTTTACGCCAAACTCAGGAACCACAACTTGTCTCTCGCAATTCATCATCTCAATCCCTTGAT
GAGATATTCCAGAGACTGAAACGACCATCTGCAGACCGGGGAAGTCTAAGTGATGATGATGAAGATGGGCATGGGACCGAGATCAAGATTTCAGGTCCTA
CCAGATAA
AA sequence
>Potri.007G096900.1 pacid=42764898 polypeptide=Potri.007G096900.1.p locus=Potri.007G096900 ID=Potri.007G096900.1.v4.1 annot-version=v4.1
MWVFYLISLPLTLGMVILTARYFAGPEVPRYVFFTVGYTWFCSLAIITLVPADIYTTKFDLDRGGISFYWIWSYWSTFLLTWAVVPLIQGFEDAGDFTVV
ERLKTSVRANLVFYLIVGAIGLFGIILLIIMHKIRIGNVLAFAMACSNTFGLVTGAFLLGFGLSEIPKGLWRNSDWSTRQKVLSHKIAKMAVRLDDAHQD
LSNAIVVAQATSNQMSKRDPLRPYMDVIDNMLAQMFKQDPSFKPQGGRLGENDMDYDTDVRSMATLRRHLRGAREEYYRCRSEYMTYVMEALELEDTVKN
YERGSSTGWQYISSFKPARTGKLGASFDTMEFLWRCILRKQLKKVLAVILCTMSAAILLAEATLLIGGVDLSLFSILINSVGKQELSMQVLAFVPLMYMC
ICTYYSLFKIGMLMFYSLTPRRTSSVSLLMICSMVARYAPPISYNFLNLINLDSKETIFEKRMGKIDKAVPFFGNDFNRIYPLIMVIYTLLVASNFFDRV
IGFFGSLKRFRFQTEADDTDGFDPSGLIILQKERSWLEQGLKVGEHVVPLARNFNGVDMESGSNSIERTAVEMKATSSLGIEDRKGSQSKSLKEESQRYG
TSREAVSNKYAAFREQNRQANMRLVEKNVAAAKVSLLDDEDSHSNNTTAGPPAGLASKWESMKNGFQSFKANIGAKKFLPLRQTQEPQLVSRNSSSQSLD
EIFQRLKRPSADRGSLSDDDEDGHGTEIKISGPTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65290 LMBR1-like membrane protein (.... Potri.007G096900
[exp]
0 1
AT1G67300 Major facilitator superfamily ... Potri.018G083200
[exp]
2.00 0.7635
AT2G27950 Ring/U-Box superfamily protein... Potri.004G217700
[exp]
2.44 0.7149
AT5G57870 eIFiso4G1 eukaryotic translation Initiat... Potri.018G104100
[exp]
4.89 0.7017
AT3G53260 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 ... Potri.010G224100
[exp]
13.78 0.7179 PAL.3
AT5G54830 DOMON domain-containing protei... Potri.018G021000
[exp]
15.81 0.6441
AT4G29900 CIF1, ATACA10, ... COMPACT INFLORESCENCE 1, autoi... Potri.006G072900
[exp]
16.12 0.6734
AT4G34940 ARO1 armadillo repeat only 1 (.1) Potri.009G131900
[exp]
17.23 0.6373
AT2G42010 PLDBETA1 phospholipase D beta 1 (.1) Potri.014G074700
[exp]
21.90 0.7017
AT2G37150 RING/U-box superfamily protein... Potri.010G220700
[exp]
22.64 0.6430
AT4G38200 SEC7-like guanine nucleotide e... Potri.009G169800
[exp]
22.71 0.7147

Potri.007G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.