Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G072000 [exp] 170 / 2e-54 AT5G65300 41 / 6e-05 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025734 [exp] 40 / 0.0003 ND / Lus10035928 [exp] 39 / 0.0008 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05340 [poplar] [flax] DUF740 Protein of unknown function (DUF740)
Representative CDS sequence Show only first row Show all	>Potri.007G097000.1 pacid=42764827 polypeptide=Potri.007G097000.1.p locus=Potri.007G097000 ID=Potri.007G097000.1.v4.1 annot-version=v4.1 ATGATCACGAGATCAGGTCACTCAAAAGCAAATTCAAAGTTAGGTTTGATCATCACAGACAAGATTCAAATCATGGGAGGGTATGAGCCAGAAAAACAAG TATGCAAGATTCATCCGTATAATGATCAGAAACAAGGGGTTTGTGCATCATGTTTAAGAGAGAGATTAAAGCAACTAATCTATGTTAACACTTCACAAGC TGCAATCATGGCACCTGCTTCATGTTCTTCTTCTCCTGATGATCCTTACTCCCCTGCTTCCTCTCGCCGCCGCCATAACCGGAACATTTCGGATAATAAT AATAATAGTATGGGTTCAATATCCTTCAGGGTAAGTATTGGTGATCGGTTAAAGAAGAGTAGATCGCTTGCTTTTGTGTCAAGAAACCATGTTGGAGAGG TCAAGAATGGGAAGAAGAATAATAATGGGTTTTGGACGAAGTTGCTTCATTTGAAGGGAAAGAAGGATCAGGTTTTGATGCGTTCTGGTGTCTCTATGAG TGAAAGGTTGTATAATTGA
AA sequence Show only first row Show all	>Potri.007G097000.1 pacid=42764827 polypeptide=Potri.007G097000.1.p locus=Potri.007G097000 ID=Potri.007G097000.1.v4.1 annot-version=v4.1 MITRSGHSKANSKLGLIITDKIQIMGGYEPEKQVCKIHPYNDQKQGVCASCLRERLKQLIYVNTSQAAIMAPASCSSSPDDPYSPASSRRRHNRNISDNN NNSMGSISFRVSIGDRLKKSRSLAFVSRNHVGEVKNGKKNNNGFWTKLLHLKGKKDQVLMRSGVSMSERLYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65300			unknown protein		Potri.007G097000 [exp]	0	1
AT3G03280			unknown protein		Potri.008G127200 [exp]	1.41	0.8620
AT5G50460			secE/sec61-gamma protein trans...		Potri.012G098400 [exp]	3.46	0.8168	SEC61.1
AT5G39670			Calcium-binding EF-hand family...		Potri.017G084800 [exp]	3.87	0.8706
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.010G107300 [exp]	6.48	0.7992
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171500 [exp]	7.14	0.8396
AT5G10695			unknown protein		Potri.010G251000 [exp]	10.77	0.8321
AT5G62865			unknown protein		Potri.018G114200 [exp]	13.07	0.7903
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.014G080000 [exp]	15.87	0.7801
					Potri.016G103900 [exp]	16.00	0.7973
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.014G099000 [exp]	17.88	0.7275

Compare expression of checked genes

Potri.007G097000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.